Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1742

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,053,792	+		Pf6N2E2_1741	0.11	+0.2
2,053,793	-		Pf6N2E2_1741	0.11	+0.2
2,054,107	+		Pf6N2E2_1741	0.47	-0.8
2,054,107	+		Pf6N2E2_1741	0.47	-0.8
2,054,118	+		Pf6N2E2_1741	0.48	-0.8
2,054,119	-		Pf6N2E2_1741	0.48	-0.8
2,054,399	-		Pf6N2E2_1741	0.80	+0.2
2,054,399	-		Pf6N2E2_1741	0.80	-0.6
2,054,399	-		Pf6N2E2_1741	0.80	-0.6
2,054,401	+		Pf6N2E2_1741	0.80	-0.8
2,054,444	-		Pf6N2E2_1741	0.85	-1.8
2,054,899	+				-0.8
2,054,899	+				+0.2
2,054,899	+				-1.4
2,054,899	+				+0.2
2,054,899	+				+0.2
2,054,900	-				-0.8
2,054,900	-				+0.2
2,054,900	-				-0.8
2,054,900	-				+0.2
2,054,926	+		Pf6N2E2_1742	0.11	+0.2
2,054,926	+		Pf6N2E2_1742	0.11	+0.2
2,054,927	-		Pf6N2E2_1742	0.11	+0.2
2,055,341	-		Pf6N2E2_1742	0.41	-0.2
2,055,678	-		Pf6N2E2_1742	0.65	+0.2
2,055,728	+		Pf6N2E2_1742	0.69	+0.2
2,055,729	-		Pf6N2E2_1742	0.69	+0.5
2,055,750	+		Pf6N2E2_1742	0.71	+1.2
2,055,805	+		Pf6N2E2_1742	0.75	-0.8
2,055,942	-		Pf6N2E2_1742	0.84	+0.2
2,056,227	+				+0.2
2,056,228	-				+0.2
2,056,444	-		Pf6N2E2_1743	0.26	-0.7
2,056,714	-		Pf6N2E2_1743	0.50	+0.2
2,056,758	+		Pf6N2E2_1743	0.54	+1.2