Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_756

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_755 and Pf6N2E2_756 are separated by 373 nucleotidesPf6N2E2_756 and Pf6N2E2_757 are separated by 274 nucleotides Pf6N2E2_755 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 864,399 to 866,138 _755 Pf6N2E2_756 - hypothetical protein, at 866,512 to 866,685 _756 Pf6N2E2_757 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 866,960 to 867,940 _757 Position (kb) 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 865.522 kb on + strand, within Pf6N2E2_755at 865.777 kb on + strand, within Pf6N2E2_755at 865.777 kb on + strand, within Pf6N2E2_755at 865.778 kb on - strand, within Pf6N2E2_755at 865.778 kb on - strand, within Pf6N2E2_755at 865.778 kb on - strand, within Pf6N2E2_755at 865.778 kb on - strand, within Pf6N2E2_755at 865.790 kb on - strand, within Pf6N2E2_755at 865.859 kb on - strand, within Pf6N2E2_755at 865.870 kb on + strand, within Pf6N2E2_755at 865.871 kb on - strand, within Pf6N2E2_755at 866.057 kb on - strandat 866.211 kb on + strandat 866.211 kb on + strandat 866.211 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.225 kb on - strandat 866.228 kb on - strandat 866.420 kb on + strandat 866.421 kb on - strandat 866.421 kb on - strandat 866.453 kb on + strandat 866.453 kb on + strandat 866.454 kb on - strandat 866.454 kb on - strandat 866.593 kb on + strand, within Pf6N2E2_756at 866.593 kb on + strand, within Pf6N2E2_756at 866.594 kb on - strand, within Pf6N2E2_756at 866.594 kb on - strand, within Pf6N2E2_756at 866.615 kb on - strand, within Pf6N2E2_756at 866.645 kb on + strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.646 kb on - strand, within Pf6N2E2_756at 866.706 kb on + strandat 866.706 kb on + strandat 866.707 kb on - strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.715 kb on + strandat 866.716 kb on - strandat 866.716 kb on - strandat 866.716 kb on - strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.717 kb on + strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.718 kb on - strandat 866.733 kb on - strandat 866.733 kb on - strandat 866.749 kb on + strandat 866.750 kb on - strandat 866.753 kb on - strandat 866.863 kb on - strandat 866.873 kb on + strandat 866.873 kb on + strandat 866.874 kb on - strandat 866.910 kb on - strandat 866.917 kb on - strandat 866.929 kb on + strandat 866.929 kb on + strandat 866.930 kb on - strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.935 kb on + strandat 866.936 kb on - strandat 866.936 kb on - strandat 866.941 kb on + strandat 866.944 kb on + strandat 866.945 kb on - strandat 867.044 kb on + strandat 867.045 kb on - strandat 867.225 kb on + strand, within Pf6N2E2_757at 867.225 kb on + strand, within Pf6N2E2_757at 867.225 kb on + strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.226 kb on - strand, within Pf6N2E2_757at 867.248 kb on + strand, within Pf6N2E2_757at 867.248 kb on + strand, within Pf6N2E2_757at 867.249 kb on - strand, within Pf6N2E2_757at 867.249 kb on - strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.251 kb on + strand, within Pf6N2E2_757at 867.252 kb on - strand, within Pf6N2E2_757at 867.252 kb on - strand, within Pf6N2E2_757at 867.302 kb on + strand, within Pf6N2E2_757at 867.302 kb on + strand, within Pf6N2E2_757at 867.486 kb on - strand, within Pf6N2E2_757at 867.549 kb on - strand, within Pf6N2E2_757

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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865,522 + Pf6N2E2_755 0.65 +0.1
865,777 + Pf6N2E2_755 0.79 -1.5
865,777 + Pf6N2E2_755 0.79 +0.1
865,778 - Pf6N2E2_755 0.79 -0.9
865,778 - Pf6N2E2_755 0.79 -2.9
865,778 - Pf6N2E2_755 0.79 -0.9
865,778 - Pf6N2E2_755 0.79 +0.1
865,790 - Pf6N2E2_755 0.80 +0.1
865,859 - Pf6N2E2_755 0.84 +0.1
865,870 + Pf6N2E2_755 0.85 +0.1
865,871 - Pf6N2E2_755 0.85 +0.1
866,057 - -1.1
866,211 + +0.5
866,211 + +0.1
866,211 + +0.1
866,224 + +0.1
866,224 + +0.1
866,224 + +0.1
866,224 + -1.5
866,225 - -0.9
866,228 - +0.1
866,420 + -1.2
866,421 - +0.1
866,421 - +0.1
866,453 + +0.1
866,453 + -0.9
866,454 - +0.1
866,454 - -0.9
866,593 + Pf6N2E2_756 0.47 +0.1
866,593 + Pf6N2E2_756 0.47 -0.9
866,594 - Pf6N2E2_756 0.47 -2.9
866,594 - Pf6N2E2_756 0.47 -1.5
866,615 - Pf6N2E2_756 0.59 -1.7
866,645 + Pf6N2E2_756 0.76 +0.1
866,646 - Pf6N2E2_756 0.77 +0.1
866,646 - Pf6N2E2_756 0.77 -0.9
866,646 - Pf6N2E2_756 0.77 -1.5
866,646 - Pf6N2E2_756 0.77 -1.2
866,706 + -1.5
866,706 + -0.3
866,707 - +0.1
866,715 + +0.1
866,715 + +0.1
866,715 + +0.1
866,715 + +0.1
866,715 + +0.3
866,715 + +0.1
866,716 - +0.1
866,716 - -0.9
866,716 - +0.1
866,717 + +0.1
866,717 + -1.3
866,717 + -0.9
866,717 + +0.1
866,718 - -1.6
866,718 - +0.1
866,718 - +0.1
866,718 - +0.1
866,718 - +0.1
866,733 - -0.9
866,733 - -1.9
866,749 + +0.1
866,750 - -0.9
866,753 - +0.1
866,863 - +0.1
866,873 + +0.1
866,873 + +0.1
866,874 - +0.1
866,910 - +0.1
866,917 - -0.4
866,929 + +2.1
866,929 + -3.9
866,930 - -1.9
866,935 + +0.1
866,935 + +0.1
866,935 + -1.5
866,935 + +0.1
866,936 - -2.1
866,936 - -0.3
866,941 + +0.1
866,944 + +0.1
866,945 - -0.9
867,044 + +0.1
867,045 - +0.1
867,225 + Pf6N2E2_757 0.27 +0.1
867,225 + Pf6N2E2_757 0.27 -0.9
867,225 + Pf6N2E2_757 0.27 -0.9
867,226 - Pf6N2E2_757 0.27 +0.1
867,226 - Pf6N2E2_757 0.27 +0.1
867,226 - Pf6N2E2_757 0.27 -0.9
867,248 + Pf6N2E2_757 0.29 +0.1
867,248 + Pf6N2E2_757 0.29 -0.9
867,249 - Pf6N2E2_757 0.29 -0.9
867,249 - Pf6N2E2_757 0.29 +0.1
867,251 + Pf6N2E2_757 0.30 +0.1
867,251 + Pf6N2E2_757 0.30 -1.5
867,251 + Pf6N2E2_757 0.30 -0.9
867,252 - Pf6N2E2_757 0.30 +0.1
867,252 - Pf6N2E2_757 0.30 +0.1
867,302 + Pf6N2E2_757 0.35 -0.6
867,302 + Pf6N2E2_757 0.35 +0.1
867,486 - Pf6N2E2_757 0.54 +1.1
867,549 - Pf6N2E2_757 0.60 -0.9

Or see this region's nucleotide sequence