Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4994

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
5,759,502	+		Pf6N2E2_4993	0.28	+0.3
5,759,502	+		Pf6N2E2_4993	0.28	-1.7
5,759,829	+		Pf6N2E2_4993	0.54	+0.3
5,759,889	+		Pf6N2E2_4993	0.59	-0.7
5,760,069	+		Pf6N2E2_4993	0.74	+0.3
5,760,293	+				+0.3
5,760,293	+				+0.3
5,760,293	+				+0.3
5,760,299	+				-0.7
5,760,299	+				+0.3
5,760,299	+				-1.2
5,760,351	+				-0.7
5,760,351	+				+0.3
5,760,351	+				-0.7
5,760,351	+				-1.5
5,760,351	+				-3.2
5,760,545	+		Pf6N2E2_4994	0.21	-0.7
5,760,691	+		Pf6N2E2_4994	0.42	-1.8
5,760,691	+		Pf6N2E2_4994	0.42	-2.4
5,760,691	+		Pf6N2E2_4994	0.42	-0.7
5,760,691	+		Pf6N2E2_4994	0.42	+0.3
5,760,691	+		Pf6N2E2_4994	0.42	-2.1
5,761,119	+				-0.7
5,761,137	+				-3.1
5,761,137	+				-0.7
5,761,137	+				-4.5
5,761,137	+				-1.7
5,761,728	+		Pf6N2E2_4996	0.14	+0.9
5,761,728	+		Pf6N2E2_4996	0.14	+0.3
5,761,728	+		Pf6N2E2_4996	0.14	+1.9
5,761,728	+		Pf6N2E2_4996	0.14	+0.3
5,761,728	+		Pf6N2E2_4996	0.14	+0.3
5,762,085	+				+0.3
5,762,085	+				-0.7