Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4664 and Pf6N2E2_4665 are separated by 282 nucleotides Pf6N2E2_4665 and Pf6N2E2_4666 are separated by 323 nucleotides
Pf6N2E2_4664 - Alginate lyase precursor (EC 4.2.2.3), at 5,393,555 to 5,394,223
_4664
Pf6N2E2_4665 - Alginate lyase precursor (EC 4.2.2.3), at 5,394,506 to 5,395,171
_4665
Pf6N2E2_4666 - Sensory box/GGDEF family protein, at 5,395,495 to 5,397,618
_4666
Position (kb) 5394
5395
5396 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5393.613 kb on + strand at 5393.614 kb on - strand at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.634 kb on + strand, within Pf6N2E2_4664 at 5393.635 kb on - strand, within Pf6N2E2_4664 at 5393.635 kb on - strand, within Pf6N2E2_4664 at 5393.635 kb on - strand, within Pf6N2E2_4664 at 5393.635 kb on - strand, within Pf6N2E2_4664 at 5393.674 kb on + strand, within Pf6N2E2_4664 at 5393.675 kb on - strand, within Pf6N2E2_4664 at 5393.700 kb on + strand, within Pf6N2E2_4664 at 5393.700 kb on + strand, within Pf6N2E2_4664 at 5393.751 kb on + strand, within Pf6N2E2_4664 at 5393.751 kb on + strand, within Pf6N2E2_4664 at 5393.751 kb on + strand, within Pf6N2E2_4664 at 5393.752 kb on - strand, within Pf6N2E2_4664 at 5393.752 kb on - strand, within Pf6N2E2_4664 at 5393.752 kb on - strand, within Pf6N2E2_4664 at 5393.791 kb on + strand, within Pf6N2E2_4664 at 5393.791 kb on + strand, within Pf6N2E2_4664 at 5393.792 kb on - strand, within Pf6N2E2_4664 at 5393.792 kb on - strand, within Pf6N2E2_4664 at 5393.859 kb on + strand, within Pf6N2E2_4664 at 5393.860 kb on - strand, within Pf6N2E2_4664 at 5393.860 kb on - strand, within Pf6N2E2_4664 at 5393.860 kb on - strand, within Pf6N2E2_4664 at 5393.860 kb on - strand, within Pf6N2E2_4664 at 5393.860 kb on - strand, within Pf6N2E2_4664 at 5393.869 kb on - strand, within Pf6N2E2_4664 at 5393.875 kb on - strand, within Pf6N2E2_4664 at 5393.949 kb on - strand, within Pf6N2E2_4664 at 5394.028 kb on - strand, within Pf6N2E2_4664 at 5394.055 kb on - strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.126 kb on + strand, within Pf6N2E2_4664 at 5394.127 kb on - strand, within Pf6N2E2_4664 at 5394.127 kb on - strand, within Pf6N2E2_4664 at 5394.127 kb on - strand, within Pf6N2E2_4664 at 5394.127 kb on - strand, within Pf6N2E2_4664 at 5394.127 kb on - strand, within Pf6N2E2_4664 at 5394.247 kb on + strand at 5394.248 kb on - strand at 5394.260 kb on + strand at 5394.260 kb on + strand at 5394.261 kb on - strand at 5394.278 kb on + strand at 5394.279 kb on - strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.387 kb on + strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.388 kb on - strand at 5394.437 kb on + strand at 5394.437 kb on + strand at 5394.455 kb on + strand at 5394.455 kb on + strand at 5394.507 kb on + strand at 5394.507 kb on + strand at 5394.508 kb on - strand at 5394.508 kb on - strand at 5394.508 kb on - strand at 5394.582 kb on + strand, within Pf6N2E2_4665 at 5394.582 kb on + strand, within Pf6N2E2_4665 at 5394.583 kb on - strand, within Pf6N2E2_4665 at 5394.583 kb on - strand, within Pf6N2E2_4665 at 5394.583 kb on - strand, within Pf6N2E2_4665 at 5394.600 kb on + strand, within Pf6N2E2_4665 at 5394.601 kb on - strand, within Pf6N2E2_4665 at 5394.699 kb on + strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.700 kb on - strand, within Pf6N2E2_4665 at 5394.814 kb on + strand, within Pf6N2E2_4665 at 5394.814 kb on + strand, within Pf6N2E2_4665 at 5394.814 kb on + strand, within Pf6N2E2_4665 at 5394.814 kb on + strand, within Pf6N2E2_4665 at 5394.814 kb on + strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.815 kb on - strand, within Pf6N2E2_4665 at 5394.816 kb on + strand, within Pf6N2E2_4665 at 5394.816 kb on + strand, within Pf6N2E2_4665 at 5394.817 kb on - strand, within Pf6N2E2_4665 at 5394.817 kb on - strand, within Pf6N2E2_4665 at 5394.860 kb on - strand, within Pf6N2E2_4665 at 5394.929 kb on - strand, within Pf6N2E2_4665 at 5394.975 kb on + strand, within Pf6N2E2_4665 at 5394.975 kb on + strand, within Pf6N2E2_4665 at 5394.976 kb on - strand, within Pf6N2E2_4665 at 5394.976 kb on - strand, within Pf6N2E2_4665 at 5395.002 kb on + strand, within Pf6N2E2_4665 at 5395.002 kb on + strand, within Pf6N2E2_4665 at 5395.002 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.006 kb on + strand, within Pf6N2E2_4665 at 5395.007 kb on - strand, within Pf6N2E2_4665 at 5395.007 kb on - strand, within Pf6N2E2_4665 at 5395.007 kb on - strand, within Pf6N2E2_4665 at 5395.074 kb on + strand, within Pf6N2E2_4665 at 5395.117 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.182 kb on + strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.183 kb on - strand at 5395.225 kb on + strand at 5395.225 kb on + strand at 5395.246 kb on - strand at 5395.401 kb on - strand at 5395.423 kb on + strand at 5395.423 kb on + strand at 5395.423 kb on + strand at 5395.424 kb on - strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.439 kb on + strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.440 kb on - strand at 5395.455 kb on + strand at 5395.455 kb on + strand at 5395.456 kb on - strand at 5395.456 kb on - strand at 5395.459 kb on + strand at 5395.641 kb on + strand at 5395.743 kb on + strand, within Pf6N2E2_4666 at 5395.811 kb on - strand, within Pf6N2E2_4666 at 5395.811 kb on - strand, within Pf6N2E2_4666 at 5395.831 kb on + strand, within Pf6N2E2_4666 at 5395.831 kb on + strand, within Pf6N2E2_4666 at 5395.831 kb on + strand, within Pf6N2E2_4666 at 5395.953 kb on + strand, within Pf6N2E2_4666 at 5396.034 kb on + strand, within Pf6N2E2_4666 at 5396.034 kb on + strand, within Pf6N2E2_4666 at 5396.069 kb on + strand, within Pf6N2E2_4666 at 5396.069 kb on + strand, within Pf6N2E2_4666 at 5396.069 kb on + strand, within Pf6N2E2_4666 at 5396.069 kb on + strand, within Pf6N2E2_4666 at 5396.070 kb on - strand, within Pf6N2E2_4666 at 5396.070 kb on - strand, within Pf6N2E2_4666 at 5396.070 kb on - strand, within Pf6N2E2_4666 at 5396.070 kb on - strand, within Pf6N2E2_4666
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 5,393,613 + -0.6 5,393,614 - -0.6 5,393,634 + Pf6N2E2_4664 0.12 +1.6 5,393,634 + Pf6N2E2_4664 0.12 -0.9 5,393,634 + Pf6N2E2_4664 0.12 -0.6 5,393,634 + Pf6N2E2_4664 0.12 +0.4 5,393,634 + Pf6N2E2_4664 0.12 +0.4 5,393,634 + Pf6N2E2_4664 0.12 -0.5 5,393,634 + Pf6N2E2_4664 0.12 -0.6 5,393,634 + Pf6N2E2_4664 0.12 -1.6 5,393,634 + Pf6N2E2_4664 0.12 -0.4 5,393,635 - Pf6N2E2_4664 0.12 -1.0 5,393,635 - Pf6N2E2_4664 0.12 -1.2 5,393,635 - Pf6N2E2_4664 0.12 -0.6 5,393,635 - Pf6N2E2_4664 0.12 +0.4 5,393,674 + Pf6N2E2_4664 0.18 -0.6 5,393,675 - Pf6N2E2_4664 0.18 -1.2 5,393,700 + Pf6N2E2_4664 0.22 +0.4 5,393,700 + Pf6N2E2_4664 0.22 -0.6 5,393,751 + Pf6N2E2_4664 0.29 +0.4 5,393,751 + Pf6N2E2_4664 0.29 -1.6 5,393,751 + Pf6N2E2_4664 0.29 -0.6 5,393,752 - Pf6N2E2_4664 0.29 -1.2 5,393,752 - Pf6N2E2_4664 0.29 +0.4 5,393,752 - Pf6N2E2_4664 0.29 +0.4 5,393,791 + Pf6N2E2_4664 0.35 -0.6 5,393,791 + Pf6N2E2_4664 0.35 +0.4 5,393,792 - Pf6N2E2_4664 0.35 +0.4 5,393,792 - Pf6N2E2_4664 0.35 -0.6 5,393,859 + Pf6N2E2_4664 0.45 +0.4 5,393,860 - Pf6N2E2_4664 0.46 -0.6 5,393,860 - Pf6N2E2_4664 0.46 -1.2 5,393,860 - Pf6N2E2_4664 0.46 +0.4 5,393,860 - Pf6N2E2_4664 0.46 +0.5 5,393,860 - Pf6N2E2_4664 0.46 -0.6 5,393,869 - Pf6N2E2_4664 0.47 +1.4 5,393,875 - Pf6N2E2_4664 0.48 +0.4 5,393,949 - Pf6N2E2_4664 0.59 -1.2 5,394,028 - Pf6N2E2_4664 0.71 -1.2 5,394,055 - Pf6N2E2_4664 0.75 -0.6 5,394,126 + Pf6N2E2_4664 0.85 +0.4 5,394,126 + Pf6N2E2_4664 0.85 -0.5 5,394,126 + Pf6N2E2_4664 0.85 +0.4 5,394,126 + Pf6N2E2_4664 0.85 +0.4 5,394,126 + Pf6N2E2_4664 0.85 -0.6 5,394,126 + Pf6N2E2_4664 0.85 -0.3 5,394,127 - Pf6N2E2_4664 0.86 -1.2 5,394,127 - Pf6N2E2_4664 0.86 -1.4 5,394,127 - Pf6N2E2_4664 0.86 -0.6 5,394,127 - Pf6N2E2_4664 0.86 -0.6 5,394,127 - Pf6N2E2_4664 0.86 +0.4 5,394,247 + +0.4 5,394,248 - +0.4 5,394,260 + +0.4 5,394,260 + +0.4 5,394,261 - +0.4 5,394,278 + +0.4 5,394,279 - -0.6 5,394,387 + +0.4 5,394,387 + -1.6 5,394,387 + +0.4 5,394,387 + +0.4 5,394,387 + +2.7 5,394,387 + -0.6 5,394,387 + -1.2 5,394,387 + -0.6 5,394,387 + +0.4 5,394,387 + +0.4 5,394,387 + +0.4 5,394,388 - -0.6 5,394,388 - -1.6 5,394,388 - +0.4 5,394,388 - +0.4 5,394,388 - +0.4 5,394,388 - -1.6 5,394,388 - -0.6 5,394,388 - +0.4 5,394,388 - -0.2 5,394,437 + -1.2 5,394,437 + +0.4 5,394,455 + -0.6 5,394,455 + +0.4 5,394,507 + +0.4 5,394,507 + -1.6 5,394,508 - -0.5 5,394,508 - +0.4 5,394,508 - +0.4 5,394,582 + Pf6N2E2_4665 0.11 -1.0 5,394,582 + Pf6N2E2_4665 0.11 -2.0 5,394,583 - Pf6N2E2_4665 0.12 -0.6 5,394,583 - Pf6N2E2_4665 0.12 +0.1 5,394,583 - Pf6N2E2_4665 0.12 -1.6 5,394,600 + Pf6N2E2_4665 0.14 +0.4 5,394,601 - Pf6N2E2_4665 0.14 -1.6 5,394,699 + Pf6N2E2_4665 0.29 +0.4 5,394,700 - Pf6N2E2_4665 0.29 -0.7 5,394,700 - Pf6N2E2_4665 0.29 +0.4 5,394,700 - Pf6N2E2_4665 0.29 -1.8 5,394,700 - Pf6N2E2_4665 0.29 -1.2 5,394,700 - Pf6N2E2_4665 0.29 -0.6 5,394,700 - Pf6N2E2_4665 0.29 +0.4 5,394,814 + Pf6N2E2_4665 0.46 -0.6 5,394,814 + Pf6N2E2_4665 0.46 -0.6 5,394,814 + Pf6N2E2_4665 0.46 -0.6 5,394,814 + Pf6N2E2_4665 0.46 +0.6 5,394,814 + Pf6N2E2_4665 0.46 -0.2 5,394,815 - Pf6N2E2_4665 0.46 -0.6 5,394,815 - Pf6N2E2_4665 0.46 +0.4 5,394,815 - Pf6N2E2_4665 0.46 -1.2 5,394,815 - Pf6N2E2_4665 0.46 +0.4 5,394,815 - Pf6N2E2_4665 0.46 -1.9 5,394,815 - Pf6N2E2_4665 0.46 -0.6 5,394,815 - Pf6N2E2_4665 0.46 +0.4 5,394,815 - Pf6N2E2_4665 0.46 -0.6 5,394,816 + Pf6N2E2_4665 0.47 -0.6 5,394,816 + Pf6N2E2_4665 0.47 -1.6 5,394,817 - Pf6N2E2_4665 0.47 +0.4 5,394,817 - Pf6N2E2_4665 0.47 +0.4 5,394,860 - Pf6N2E2_4665 0.53 -2.6 5,394,929 - Pf6N2E2_4665 0.64 -1.2 5,394,975 + Pf6N2E2_4665 0.70 +0.4 5,394,975 + Pf6N2E2_4665 0.70 -0.6 5,394,976 - Pf6N2E2_4665 0.71 +0.4 5,394,976 - Pf6N2E2_4665 0.71 -0.6 5,395,002 + Pf6N2E2_4665 0.74 +0.4 5,395,002 + Pf6N2E2_4665 0.74 -0.5 5,395,002 + Pf6N2E2_4665 0.74 -0.6 5,395,006 + Pf6N2E2_4665 0.75 -1.2 5,395,006 + Pf6N2E2_4665 0.75 +0.4 5,395,006 + Pf6N2E2_4665 0.75 -1.2 5,395,006 + Pf6N2E2_4665 0.75 -0.6 5,395,006 + Pf6N2E2_4665 0.75 -0.6 5,395,006 + Pf6N2E2_4665 0.75 -1.6 5,395,006 + Pf6N2E2_4665 0.75 +0.4 5,395,006 + Pf6N2E2_4665 0.75 +0.4 5,395,006 + Pf6N2E2_4665 0.75 -0.3 5,395,007 - Pf6N2E2_4665 0.75 +0.4 5,395,007 - Pf6N2E2_4665 0.75 +0.4 5,395,007 - Pf6N2E2_4665 0.75 -1.0 5,395,074 + Pf6N2E2_4665 0.85 -1.0 5,395,117 + -0.6 5,395,182 + +0.4 5,395,182 + -1.2 5,395,182 + -0.6 5,395,182 + -1.2 5,395,182 + -0.2 5,395,182 + +0.4 5,395,182 + -0.8 5,395,182 + -0.2 5,395,182 + +0.4 5,395,183 - +0.4 5,395,183 - -0.6 5,395,183 - -1.2 5,395,183 - -0.6 5,395,183 - +0.1 5,395,183 - -0.6 5,395,183 - +0.8 5,395,183 - -1.2 5,395,225 + -1.1 5,395,225 + -1.2 5,395,246 - +0.4 5,395,401 - +0.4 5,395,423 + +0.4 5,395,423 + -1.2 5,395,423 + -0.6 5,395,424 - -1.2 5,395,439 + +0.4 5,395,439 + -0.6 5,395,439 + -0.4 5,395,439 + -0.6 5,395,439 + +0.4 5,395,439 + -1.6 5,395,439 + -0.6 5,395,440 - +0.4 5,395,440 - -0.6 5,395,440 - +0.7 5,395,440 - +0.4 5,395,440 - +0.4 5,395,440 - -0.6 5,395,440 - +0.4 5,395,440 - +0.4 5,395,455 + -0.3 5,395,455 + +0.4 5,395,456 - +0.4 5,395,456 - -0.6 5,395,459 + +0.4 5,395,641 + -0.6 5,395,743 + Pf6N2E2_4666 0.12 +0.4 5,395,811 - Pf6N2E2_4666 0.15 +0.4 5,395,811 - Pf6N2E2_4666 0.15 +0.4 5,395,831 + Pf6N2E2_4666 0.16 +0.4 5,395,831 + Pf6N2E2_4666 0.16 -0.9 5,395,831 + Pf6N2E2_4666 0.16 +0.4 5,395,953 + Pf6N2E2_4666 0.22 +0.4 5,396,034 + Pf6N2E2_4666 0.25 +0.4 5,396,034 + Pf6N2E2_4666 0.25 -0.6 5,396,069 + Pf6N2E2_4666 0.27 -2.0 5,396,069 + Pf6N2E2_4666 0.27 -1.6 5,396,069 + Pf6N2E2_4666 0.27 -0.2 5,396,069 + Pf6N2E2_4666 0.27 -0.5 5,396,070 - Pf6N2E2_4666 0.27 +0.4 5,396,070 - Pf6N2E2_4666 0.27 +0.4 5,396,070 - Pf6N2E2_4666 0.27 +0.4 5,396,070 - Pf6N2E2_4666 0.27 -0.6
Or see this region's nucleotide sequence