Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4554

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4553 and Pf6N2E2_4554 are separated by 403 nucleotidesPf6N2E2_4554 and Pf6N2E2_4555 are separated by 108 nucleotides Pf6N2E2_4553 - Nitrogen regulation protein NtrC, at 5,282,347 to 5,283,270 _4553 Pf6N2E2_4554 - Thiol-disulfide isomerase and thioredoxins, at 5,283,674 to 5,284,249 _4554 Pf6N2E2_4555 - Lysophospholipase (EC 3.1.1.5), at 5,284,358 to 5,285,305 _4555 Position (kb) 5283 5284 5285Strain fitness (log2 ratio) -3 -2 -1 0 1at 5282.771 kb on + strand, within Pf6N2E2_4553at 5282.771 kb on + strand, within Pf6N2E2_4553at 5282.954 kb on + strand, within Pf6N2E2_4553at 5282.954 kb on + strand, within Pf6N2E2_4553at 5282.967 kb on + strand, within Pf6N2E2_4553at 5282.968 kb on - strand, within Pf6N2E2_4553at 5282.968 kb on - strand, within Pf6N2E2_4553at 5283.012 kb on + strand, within Pf6N2E2_4553at 5283.233 kb on + strandat 5283.233 kb on + strandat 5283.233 kb on + strandat 5283.376 kb on - strandat 5283.376 kb on - strandat 5283.378 kb on + strandat 5283.379 kb on - strandat 5283.404 kb on - strandat 5283.416 kb on - strandat 5283.461 kb on - strandat 5283.583 kb on + strandat 5283.583 kb on + strandat 5283.583 kb on + strandat 5283.583 kb on + strandat 5283.601 kb on + strandat 5283.614 kb on + strandat 5283.614 kb on + strandat 5283.614 kb on + strandat 5283.614 kb on + strandat 5283.614 kb on + strandat 5283.615 kb on - strandat 5283.615 kb on - strandat 5283.655 kb on - strandat 5283.664 kb on - strandat 5283.667 kb on + strandat 5283.730 kb on + strandat 5283.731 kb on - strandat 5283.811 kb on - strand, within Pf6N2E2_4554at 5283.822 kb on + strand, within Pf6N2E2_4554at 5283.964 kb on - strand, within Pf6N2E2_4554at 5283.983 kb on + strand, within Pf6N2E2_4554at 5283.983 kb on + strand, within Pf6N2E2_4554at 5283.983 kb on + strand, within Pf6N2E2_4554at 5283.983 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.987 kb on + strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.988 kb on - strand, within Pf6N2E2_4554at 5283.991 kb on + strand, within Pf6N2E2_4554at 5284.068 kb on - strand, within Pf6N2E2_4554at 5284.173 kb on + strand, within Pf6N2E2_4554at 5284.187 kb on + strand, within Pf6N2E2_4554at 5284.273 kb on + strandat 5284.274 kb on - strandat 5284.304 kb on - strandat 5284.341 kb on + strandat 5284.458 kb on - strand, within Pf6N2E2_4555at 5284.458 kb on - strand, within Pf6N2E2_4555at 5284.520 kb on + strand, within Pf6N2E2_4555at 5284.520 kb on + strand, within Pf6N2E2_4555at 5284.587 kb on - strand, within Pf6N2E2_4555at 5284.589 kb on + strand, within Pf6N2E2_4555at 5284.589 kb on + strand, within Pf6N2E2_4555at 5284.590 kb on - strand, within Pf6N2E2_4555at 5284.721 kb on + strand, within Pf6N2E2_4555at 5284.925 kb on + strand, within Pf6N2E2_4555at 5284.925 kb on + strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.926 kb on - strand, within Pf6N2E2_4555at 5284.928 kb on + strand, within Pf6N2E2_4555at 5284.928 kb on + strand, within Pf6N2E2_4555at 5284.928 kb on + strand, within Pf6N2E2_4555at 5284.928 kb on + strand, within Pf6N2E2_4555at 5284.929 kb on - strand, within Pf6N2E2_4555at 5284.929 kb on - strand, within Pf6N2E2_4555at 5284.929 kb on - strand, within Pf6N2E2_4555at 5285.032 kb on - strand, within Pf6N2E2_4555at 5285.081 kb on - strand, within Pf6N2E2_4555at 5285.081 kb on - strand, within Pf6N2E2_4555

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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5,282,771 + Pf6N2E2_4553 0.46 -1.2
5,282,771 + Pf6N2E2_4553 0.46 -2.2
5,282,954 + Pf6N2E2_4553 0.66 +0.4
5,282,954 + Pf6N2E2_4553 0.66 -0.6
5,282,967 + Pf6N2E2_4553 0.67 -0.6
5,282,968 - Pf6N2E2_4553 0.67 +0.4
5,282,968 - Pf6N2E2_4553 0.67 -1.2
5,283,012 + Pf6N2E2_4553 0.72 -3.2
5,283,233 + +0.4
5,283,233 + +0.4
5,283,233 + +0.4
5,283,376 - -1.6
5,283,376 - -1.2
5,283,378 + -1.2
5,283,379 - -0.6
5,283,404 - -0.6
5,283,416 - -0.4
5,283,461 - +0.4
5,283,583 + -0.1
5,283,583 + +0.4
5,283,583 + -0.2
5,283,583 + -1.6
5,283,601 + -0.5
5,283,614 + +0.4
5,283,614 + -0.4
5,283,614 + +0.4
5,283,614 + +0.4
5,283,614 + -0.6
5,283,615 - -0.6
5,283,615 - +0.4
5,283,655 - -1.4
5,283,664 - +0.4
5,283,667 + +0.4
5,283,730 + -0.6
5,283,731 - -0.6
5,283,811 - Pf6N2E2_4554 0.24 -0.1
5,283,822 + Pf6N2E2_4554 0.26 -0.7
5,283,964 - Pf6N2E2_4554 0.50 +1.0
5,283,983 + Pf6N2E2_4554 0.54 +0.4
5,283,983 + Pf6N2E2_4554 0.54 -0.6
5,283,983 + Pf6N2E2_4554 0.54 +0.4
5,283,983 + Pf6N2E2_4554 0.54 +0.4
5,283,987 + Pf6N2E2_4554 0.54 +0.4
5,283,987 + Pf6N2E2_4554 0.54 -0.3
5,283,987 + Pf6N2E2_4554 0.54 -0.3
5,283,987 + Pf6N2E2_4554 0.54 -0.5
5,283,987 + Pf6N2E2_4554 0.54 +0.4
5,283,987 + Pf6N2E2_4554 0.54 +0.4
5,283,987 + Pf6N2E2_4554 0.54 +0.3
5,283,987 + Pf6N2E2_4554 0.54 -0.0
5,283,987 + Pf6N2E2_4554 0.54 -1.2
5,283,987 + Pf6N2E2_4554 0.54 -1.4
5,283,987 + Pf6N2E2_4554 0.54 +0.4
5,283,987 + Pf6N2E2_4554 0.54 -1.2
5,283,987 + Pf6N2E2_4554 0.54 -1.6
5,283,987 + Pf6N2E2_4554 0.54 -0.6
5,283,987 + Pf6N2E2_4554 0.54 +0.4
5,283,988 - Pf6N2E2_4554 0.55 +0.4
5,283,988 - Pf6N2E2_4554 0.55 -1.9
5,283,988 - Pf6N2E2_4554 0.55 -1.2
5,283,988 - Pf6N2E2_4554 0.55 +0.4
5,283,988 - Pf6N2E2_4554 0.55 -0.1
5,283,988 - Pf6N2E2_4554 0.55 -1.2
5,283,988 - Pf6N2E2_4554 0.55 +0.4
5,283,988 - Pf6N2E2_4554 0.55 -0.4
5,283,988 - Pf6N2E2_4554 0.55 -0.6
5,283,988 - Pf6N2E2_4554 0.55 -0.1
5,283,988 - Pf6N2E2_4554 0.55 -0.6
5,283,988 - Pf6N2E2_4554 0.55 -0.2
5,283,988 - Pf6N2E2_4554 0.55 +1.0
5,283,988 - Pf6N2E2_4554 0.55 -0.6
5,283,988 - Pf6N2E2_4554 0.55 +0.4
5,283,988 - Pf6N2E2_4554 0.55 -0.6
5,283,991 + Pf6N2E2_4554 0.55 +0.4
5,284,068 - Pf6N2E2_4554 0.68 -0.6
5,284,173 + Pf6N2E2_4554 0.87 -0.0
5,284,187 + Pf6N2E2_4554 0.89 +0.4
5,284,273 + -0.9
5,284,274 - -0.5
5,284,304 - -0.2
5,284,341 + -0.6
5,284,458 - Pf6N2E2_4555 0.11 +0.4
5,284,458 - Pf6N2E2_4555 0.11 -0.6
5,284,520 + Pf6N2E2_4555 0.17 -0.8
5,284,520 + Pf6N2E2_4555 0.17 +0.4
5,284,587 - Pf6N2E2_4555 0.24 +0.2
5,284,589 + Pf6N2E2_4555 0.24 -1.2
5,284,589 + Pf6N2E2_4555 0.24 -0.6
5,284,590 - Pf6N2E2_4555 0.24 -1.2
5,284,721 + Pf6N2E2_4555 0.38 +0.3
5,284,925 + Pf6N2E2_4555 0.60 +0.1
5,284,925 + Pf6N2E2_4555 0.60 +0.2
5,284,926 - Pf6N2E2_4555 0.60 -1.7
5,284,926 - Pf6N2E2_4555 0.60 -0.4
5,284,926 - Pf6N2E2_4555 0.60 -0.6
5,284,926 - Pf6N2E2_4555 0.60 -0.1
5,284,926 - Pf6N2E2_4555 0.60 +0.4
5,284,926 - Pf6N2E2_4555 0.60 -0.3
5,284,928 + Pf6N2E2_4555 0.60 -0.5
5,284,928 + Pf6N2E2_4555 0.60 +0.2
5,284,928 + Pf6N2E2_4555 0.60 -0.1
5,284,928 + Pf6N2E2_4555 0.60 -0.6
5,284,929 - Pf6N2E2_4555 0.60 +0.4
5,284,929 - Pf6N2E2_4555 0.60 -1.2
5,284,929 - Pf6N2E2_4555 0.60 -0.6
5,285,032 - Pf6N2E2_4555 0.71 -0.2
5,285,081 - Pf6N2E2_4555 0.76 -1.4
5,285,081 - Pf6N2E2_4555 0.76 -0.9

Or see this region's nucleotide sequence