Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4173

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4171 and Pf6N2E2_4172 are separated by 21 nucleotidesPf6N2E2_4172 and Pf6N2E2_4173 overlap by 1 nucleotidesPf6N2E2_4173 and Pf6N2E2_4174 are separated by 79 nucleotides Pf6N2E2_4171 - hypothetical protein, at 4,853,837 to 4,854,037 _4171 Pf6N2E2_4172 - Methionine ABC transporter ATP-binding protein, at 4,854,059 to 4,854,928 _4172 Pf6N2E2_4173 - Methionine ABC transporter permease protein, at 4,854,928 to 4,855,602 _4173 Pf6N2E2_4174 - Methionine ABC transporter substrate-binding protein, at 4,855,682 to 4,856,455 _4174 Position (kb) 4854 4855 4856Strain fitness (log2 ratio) -2 -1 0 1 2at 4853.944 kb on + strand, within Pf6N2E2_4171at 4853.944 kb on + strand, within Pf6N2E2_4171at 4854.332 kb on + strand, within Pf6N2E2_4172at 4854.515 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4855.061 kb on + strand, within Pf6N2E2_4173at 4855.061 kb on + strand, within Pf6N2E2_4173at 4855.062 kb on - strand, within Pf6N2E2_4173at 4855.062 kb on - strand, within Pf6N2E2_4173at 4855.105 kb on + strand, within Pf6N2E2_4173at 4855.105 kb on + strand, within Pf6N2E2_4173at 4855.105 kb on + strand, within Pf6N2E2_4173at 4855.105 kb on + strand, within Pf6N2E2_4173at 4855.105 kb on + strand, within Pf6N2E2_4173at 4855.106 kb on - strand, within Pf6N2E2_4173at 4855.106 kb on - strand, within Pf6N2E2_4173at 4855.106 kb on - strand, within Pf6N2E2_4173at 4855.398 kb on + strand, within Pf6N2E2_4173at 4855.426 kb on + strand, within Pf6N2E2_4173at 4855.583 kb on + strandat 4855.601 kb on - strandat 4855.675 kb on + strandat 4855.676 kb on - strandat 4855.676 kb on - strandat 4855.676 kb on - strandat 4855.676 kb on - strandat 4855.692 kb on + strandat 4855.693 kb on - strandat 4855.693 kb on - strandat 4855.693 kb on - strandat 4855.693 kb on - strandat 4855.850 kb on + strand, within Pf6N2E2_4174at 4855.850 kb on + strand, within Pf6N2E2_4174at 4855.850 kb on + strand, within Pf6N2E2_4174at 4855.851 kb on - strand, within Pf6N2E2_4174at 4855.851 kb on - strand, within Pf6N2E2_4174at 4855.866 kb on + strand, within Pf6N2E2_4174at 4855.867 kb on - strand, within Pf6N2E2_4174at 4855.867 kb on - strand, within Pf6N2E2_4174at 4855.867 kb on - strand, within Pf6N2E2_4174at 4855.867 kb on - strand, within Pf6N2E2_4174at 4855.916 kb on + strand, within Pf6N2E2_4174at 4855.917 kb on - strand, within Pf6N2E2_4174at 4855.917 kb on - strand, within Pf6N2E2_4174at 4855.953 kb on + strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.954 kb on - strand, within Pf6N2E2_4174at 4855.995 kb on - strand, within Pf6N2E2_4174at 4856.006 kb on + strand, within Pf6N2E2_4174at 4856.006 kb on + strand, within Pf6N2E2_4174at 4856.006 kb on + strand, within Pf6N2E2_4174at 4856.006 kb on + strand, within Pf6N2E2_4174at 4856.007 kb on - strand, within Pf6N2E2_4174at 4856.007 kb on - strand, within Pf6N2E2_4174at 4856.007 kb on - strand, within Pf6N2E2_4174at 4856.007 kb on - strand, within Pf6N2E2_4174at 4856.018 kb on - strand, within Pf6N2E2_4174at 4856.018 kb on - strand, within Pf6N2E2_4174at 4856.018 kb on - strand, within Pf6N2E2_4174at 4856.018 kb on - strand, within Pf6N2E2_4174at 4856.018 kb on - strand, within Pf6N2E2_4174at 4856.245 kb on + strand, within Pf6N2E2_4174at 4856.246 kb on - strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.252 kb on + strand, within Pf6N2E2_4174at 4856.253 kb on - strand, within Pf6N2E2_4174at 4856.253 kb on - strand, within Pf6N2E2_4174at 4856.253 kb on - strand, within Pf6N2E2_4174at 4856.305 kb on + strand, within Pf6N2E2_4174at 4856.305 kb on + strand, within Pf6N2E2_4174at 4856.318 kb on + strand, within Pf6N2E2_4174at 4856.318 kb on + strand, within Pf6N2E2_4174at 4856.318 kb on + strand, within Pf6N2E2_4174at 4856.318 kb on + strand, within Pf6N2E2_4174at 4856.319 kb on - strand, within Pf6N2E2_4174at 4856.319 kb on - strand, within Pf6N2E2_4174at 4856.413 kb on + strandat 4856.414 kb on - strandat 4856.426 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.462 kb on + strandat 4856.463 kb on - strandat 4856.463 kb on - strandat 4856.463 kb on - strandat 4856.463 kb on - strandat 4856.463 kb on - strandat 4856.488 kb on - strandat 4856.523 kb on - strandat 4856.579 kb on + strandat 4856.579 kb on + strandat 4856.580 kb on - strandat 4856.580 kb on - strandat 4856.580 kb on - strandat 4856.592 kb on - strandat 4856.595 kb on + strandat 4856.596 kb on - strandat 4856.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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4,853,944 + Pf6N2E2_4171 0.53 +0.4
4,853,944 + Pf6N2E2_4171 0.53 -1.6
4,854,332 + Pf6N2E2_4172 0.31 -0.5
4,854,515 - Pf6N2E2_4172 0.52 -0.6
4,854,744 - Pf6N2E2_4172 0.79 +0.4
4,854,744 - Pf6N2E2_4172 0.79 -0.7
4,854,744 - Pf6N2E2_4172 0.79 -0.6
4,854,788 + Pf6N2E2_4172 0.84 +0.4
4,854,788 + Pf6N2E2_4172 0.84 -0.3
4,854,788 + Pf6N2E2_4172 0.84 -0.5
4,854,789 - Pf6N2E2_4172 0.84 +0.4
4,854,789 - Pf6N2E2_4172 0.84 -0.6
4,854,789 - Pf6N2E2_4172 0.84 +0.4
4,854,789 - Pf6N2E2_4172 0.84 +0.4
4,855,061 + Pf6N2E2_4173 0.20 +0.4
4,855,061 + Pf6N2E2_4173 0.20 +0.4
4,855,062 - Pf6N2E2_4173 0.20 -1.1
4,855,062 - Pf6N2E2_4173 0.20 -0.6
4,855,105 + Pf6N2E2_4173 0.26 -0.6
4,855,105 + Pf6N2E2_4173 0.26 -1.6
4,855,105 + Pf6N2E2_4173 0.26 -0.1
4,855,105 + Pf6N2E2_4173 0.26 -1.6
4,855,105 + Pf6N2E2_4173 0.26 -0.6
4,855,106 - Pf6N2E2_4173 0.26 +0.4
4,855,106 - Pf6N2E2_4173 0.26 +0.4
4,855,106 - Pf6N2E2_4173 0.26 -0.6
4,855,398 + Pf6N2E2_4173 0.70 +0.1
4,855,426 + Pf6N2E2_4173 0.74 -1.0
4,855,583 + +0.4
4,855,601 - -1.1
4,855,675 + +0.4
4,855,676 - -0.6
4,855,676 - -1.1
4,855,676 - +0.4
4,855,676 - +0.4
4,855,692 + +0.4
4,855,693 - -2.6
4,855,693 - -1.6
4,855,693 - +0.4
4,855,693 - +1.0
4,855,850 + Pf6N2E2_4174 0.22 +0.4
4,855,850 + Pf6N2E2_4174 0.22 -1.1
4,855,850 + Pf6N2E2_4174 0.22 +0.4
4,855,851 - Pf6N2E2_4174 0.22 +0.4
4,855,851 - Pf6N2E2_4174 0.22 +0.4
4,855,866 + Pf6N2E2_4174 0.24 +0.4
4,855,867 - Pf6N2E2_4174 0.24 -0.4
4,855,867 - Pf6N2E2_4174 0.24 +0.4
4,855,867 - Pf6N2E2_4174 0.24 +0.4
4,855,867 - Pf6N2E2_4174 0.24 +0.4
4,855,916 + Pf6N2E2_4174 0.30 +0.4
4,855,917 - Pf6N2E2_4174 0.30 +0.4
4,855,917 - Pf6N2E2_4174 0.30 +0.4
4,855,953 + Pf6N2E2_4174 0.35 -0.6
4,855,954 - Pf6N2E2_4174 0.35 +0.4
4,855,954 - Pf6N2E2_4174 0.35 -0.6
4,855,954 - Pf6N2E2_4174 0.35 +0.4
4,855,954 - Pf6N2E2_4174 0.35 +0.4
4,855,954 - Pf6N2E2_4174 0.35 -2.3
4,855,954 - Pf6N2E2_4174 0.35 +0.4
4,855,954 - Pf6N2E2_4174 0.35 -1.0
4,855,995 - Pf6N2E2_4174 0.40 -1.1
4,856,006 + Pf6N2E2_4174 0.42 -0.7
4,856,006 + Pf6N2E2_4174 0.42 -1.0
4,856,006 + Pf6N2E2_4174 0.42 +0.4
4,856,006 + Pf6N2E2_4174 0.42 +0.4
4,856,007 - Pf6N2E2_4174 0.42 -1.1
4,856,007 - Pf6N2E2_4174 0.42 -0.3
4,856,007 - Pf6N2E2_4174 0.42 -0.6
4,856,007 - Pf6N2E2_4174 0.42 +0.2
4,856,018 - Pf6N2E2_4174 0.43 +0.4
4,856,018 - Pf6N2E2_4174 0.43 -1.6
4,856,018 - Pf6N2E2_4174 0.43 +0.4
4,856,018 - Pf6N2E2_4174 0.43 +0.4
4,856,018 - Pf6N2E2_4174 0.43 -0.6
4,856,245 + Pf6N2E2_4174 0.73 -1.6
4,856,246 - Pf6N2E2_4174 0.73 -1.1
4,856,252 + Pf6N2E2_4174 0.74 -1.1
4,856,252 + Pf6N2E2_4174 0.74 -0.6
4,856,252 + Pf6N2E2_4174 0.74 +0.4
4,856,252 + Pf6N2E2_4174 0.74 +0.4
4,856,252 + Pf6N2E2_4174 0.74 -0.6
4,856,252 + Pf6N2E2_4174 0.74 -1.6
4,856,252 + Pf6N2E2_4174 0.74 +0.4
4,856,252 + Pf6N2E2_4174 0.74 +0.4
4,856,253 - Pf6N2E2_4174 0.74 -0.6
4,856,253 - Pf6N2E2_4174 0.74 -0.6
4,856,253 - Pf6N2E2_4174 0.74 -0.6
4,856,305 + Pf6N2E2_4174 0.80 +0.4
4,856,305 + Pf6N2E2_4174 0.80 -0.6
4,856,318 + Pf6N2E2_4174 0.82 -1.1
4,856,318 + Pf6N2E2_4174 0.82 -0.2
4,856,318 + Pf6N2E2_4174 0.82 +0.4
4,856,318 + Pf6N2E2_4174 0.82 -0.6
4,856,319 - Pf6N2E2_4174 0.82 -1.1
4,856,319 - Pf6N2E2_4174 0.82 -1.1
4,856,413 + -1.1
4,856,414 - +0.4
4,856,426 + +0.4
4,856,462 + +0.4
4,856,462 + +0.4
4,856,462 + -1.1
4,856,462 + -0.6
4,856,462 + +0.4
4,856,462 + -0.3
4,856,462 + +0.4
4,856,462 + -1.1
4,856,462 + +0.4
4,856,462 + -0.6
4,856,463 - -0.6
4,856,463 - -1.6
4,856,463 - +0.4
4,856,463 - -0.6
4,856,463 - -1.1
4,856,488 - +2.4
4,856,523 - +0.4
4,856,579 + +0.4
4,856,579 + +0.4
4,856,580 - -0.2
4,856,580 - -0.6
4,856,580 - +0.4
4,856,592 - -2.4
4,856,595 + +0.1
4,856,596 - -2.7
4,856,596 - -1.1

Or see this region's nucleotide sequence