Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_389 and Pf6N2E2_390 are separated by 58 nucleotides Pf6N2E2_390 and Pf6N2E2_391 are separated by 48 nucleotides Pf6N2E2_391 and Pf6N2E2_392 are separated by 21 nucleotides
Pf6N2E2_389 - Choline dehydrogenase (EC 1.1.99.1), at 456,997 to 458,562
_389
Pf6N2E2_390 - hypothetical protein, at 458,621 to 459,394
_390
Pf6N2E2_391 - hypothetical protein, at 459,443 to 460,921
_391
Pf6N2E2_392 - Transcriptional regulator, at 460,943 to 461,851
_392
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.538 kb on - strand at 458.538 kb on - strand at 458.794 kb on - strand, within Pf6N2E2_390 at 458.794 kb on - strand, within Pf6N2E2_390 at 458.794 kb on - strand, within Pf6N2E2_390 at 458.943 kb on + strand, within Pf6N2E2_390 at 458.944 kb on - strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.055 kb on - strand, within Pf6N2E2_390 at 459.288 kb on - strand, within Pf6N2E2_390 at 459.288 kb on - strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.459 kb on + strand at 459.899 kb on + strand, within Pf6N2E2_391 at 459.899 kb on + strand, within Pf6N2E2_391 at 459.900 kb on - strand, within Pf6N2E2_391 at 459.900 kb on - strand, within Pf6N2E2_391 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.473 kb on - strand, within Pf6N2E2_391 at 460.668 kb on + strand, within Pf6N2E2_391 at 460.669 kb on - strand, within Pf6N2E2_391 at 460.783 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.849 kb on - strand at 460.849 kb on - strand at 460.849 kb on - strand at 461.022 kb on + strand at 461.023 kb on - strand at 461.025 kb on + strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.308 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.350 kb on - strand, within Pf6N2E2_392 at 461.383 kb on + strand, within Pf6N2E2_392 at 461.394 kb on - strand, within Pf6N2E2_392 at 461.477 kb on + strand, within Pf6N2E2_392 at 461.478 kb on - strand, within Pf6N2E2_392 at 461.677 kb on + strand, within Pf6N2E2_392 at 461.686 kb on + strand, within Pf6N2E2_392 at 461.834 kb on + strand at 461.842 kb on + strand at 461.842 kb on + strand at 461.916 kb on + strand at 461.917 kb on - strand at 461.917 kb on - strand at 461.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 458,538 - -0.8 458,538 - +0.2 458,794 - Pf6N2E2_390 0.22 -0.7 458,794 - Pf6N2E2_390 0.22 +0.2 458,794 - Pf6N2E2_390 0.22 -0.5 458,943 + Pf6N2E2_390 0.42 -1.1 458,944 - Pf6N2E2_390 0.42 +0.2 459,054 + Pf6N2E2_390 0.56 -0.1 459,054 + Pf6N2E2_390 0.56 -0.5 459,054 + Pf6N2E2_390 0.56 +0.2 459,055 - Pf6N2E2_390 0.56 +2.0 459,288 - Pf6N2E2_390 0.86 -0.8 459,288 - Pf6N2E2_390 0.86 +0.2 459,310 + Pf6N2E2_390 0.89 -0.8 459,310 + Pf6N2E2_390 0.89 -0.3 459,310 + Pf6N2E2_390 0.89 -0.8 459,311 - Pf6N2E2_390 0.89 +0.2 459,311 - Pf6N2E2_390 0.89 +0.2 459,311 - Pf6N2E2_390 0.89 +0.2 459,311 - Pf6N2E2_390 0.89 -0.8 459,311 - Pf6N2E2_390 0.89 +0.2 459,459 + +0.2 459,899 + Pf6N2E2_391 0.31 +0.2 459,899 + Pf6N2E2_391 0.31 +0.2 459,900 - Pf6N2E2_391 0.31 +0.6 459,900 - Pf6N2E2_391 0.31 -0.1 460,310 + Pf6N2E2_391 0.59 +0.5 460,310 + Pf6N2E2_391 0.59 +0.2 460,473 - Pf6N2E2_391 0.70 -0.4 460,668 + Pf6N2E2_391 0.83 +0.2 460,669 - Pf6N2E2_391 0.83 +0.8 460,783 + +0.2 460,848 + +0.2 460,848 + +0.2 460,848 + -1.4 460,849 - +0.2 460,849 - +0.2 460,849 - -1.4 461,022 + -1.4 461,023 - -0.5 461,025 + -0.9 461,026 - -1.4 461,026 - -1.0 461,026 - +0.2 461,308 + Pf6N2E2_392 0.40 +0.2 461,313 + Pf6N2E2_392 0.41 -1.4 461,313 + Pf6N2E2_392 0.41 +0.2 461,314 - Pf6N2E2_392 0.41 -1.7 461,314 - Pf6N2E2_392 0.41 -2.4 461,326 - Pf6N2E2_392 0.42 -0.8 461,326 - Pf6N2E2_392 0.42 -0.2 461,350 - Pf6N2E2_392 0.45 -0.7 461,383 + Pf6N2E2_392 0.48 -0.8 461,394 - Pf6N2E2_392 0.50 +0.2 461,477 + Pf6N2E2_392 0.59 -1.1 461,478 - Pf6N2E2_392 0.59 -0.2 461,677 + Pf6N2E2_392 0.81 -0.4 461,686 + Pf6N2E2_392 0.82 +0.2 461,834 + -1.4 461,842 + -0.8 461,842 + -0.8 461,916 + +0.2 461,917 - +0.2 461,917 - +0.2 461,917 - +0.2
Or see this region's nucleotide sequence