Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2468

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2467 and Pf6N2E2_2468 are separated by 20 nucleotidesPf6N2E2_2468 and Pf6N2E2_2469 are separated by 51 nucleotidesPf6N2E2_2469 and Pf6N2E2_2470 are separated by 16 nucleotides Pf6N2E2_2467 - 5'-nucleotidase (EC 3.1.3.5), at 2,916,158 to 2,917,063 _2467 Pf6N2E2_2468 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 2,917,084 to 2,918,037 _2468 Pf6N2E2_2469 - hypothetical protein, at 2,918,089 to 2,918,289 _2469 Pf6N2E2_2470 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,918,306 to 2,919,382 _2470 Position (kb) 2917 2918 2919Strain fitness (log2 ratio) -3 -2 -1 0 1at 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.105 kb on - strandat 2916.105 kb on - strandat 2916.105 kb on - strandat 2916.328 kb on + strand, within Pf6N2E2_2467at 2916.329 kb on - strand, within Pf6N2E2_2467at 2916.398 kb on - strand, within Pf6N2E2_2467at 2916.541 kb on - strand, within Pf6N2E2_2467at 2916.726 kb on + strand, within Pf6N2E2_2467at 2916.981 kb on + strandat 2916.981 kb on + strandat 2916.981 kb on + strandat 2916.981 kb on + strandat 2916.982 kb on - strandat 2916.982 kb on - strandat 2917.092 kb on + strandat 2917.092 kb on + strandat 2917.093 kb on - strandat 2917.093 kb on - strandat 2917.095 kb on - strandat 2917.095 kb on - strandat 2917.095 kb on - strandat 2917.121 kb on + strandat 2917.122 kb on - strandat 2917.122 kb on - strandat 2917.122 kb on - strandat 2917.122 kb on - strandat 2917.184 kb on + strand, within Pf6N2E2_2468at 2917.185 kb on - strand, within Pf6N2E2_2468at 2917.220 kb on + strand, within Pf6N2E2_2468at 2917.221 kb on - strand, within Pf6N2E2_2468at 2917.221 kb on - strandat 2917.229 kb on + strand, within Pf6N2E2_2468at 2917.229 kb on + strand, within Pf6N2E2_2468at 2917.229 kb on + strand, within Pf6N2E2_2468at 2917.229 kb on + strand, within Pf6N2E2_2468at 2917.230 kb on - strand, within Pf6N2E2_2468at 2917.245 kb on - strand, within Pf6N2E2_2468at 2917.277 kb on + strand, within Pf6N2E2_2468at 2917.278 kb on - strand, within Pf6N2E2_2468at 2917.300 kb on - strand, within Pf6N2E2_2468at 2917.365 kb on + strand, within Pf6N2E2_2468at 2917.392 kb on + strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2918.056 kb on - strandat 2918.073 kb on + strandat 2918.073 kb on + strandat 2918.073 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.108 kb on - strandat 2918.108 kb on - strandat 2918.161 kb on + strand, within Pf6N2E2_2469at 2918.162 kb on - strand, within Pf6N2E2_2469at 2918.162 kb on - strand, within Pf6N2E2_2469at 2918.163 kb on + strand, within Pf6N2E2_2469at 2918.172 kb on - strand, within Pf6N2E2_2469at 2918.238 kb on - strand, within Pf6N2E2_2469at 2918.238 kb on - strand, within Pf6N2E2_2469at 2918.300 kb on - strandat 2918.333 kb on - strandat 2918.523 kb on - strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.571 kb on - strand, within Pf6N2E2_2470at 2918.571 kb on - strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.589 kb on - strand, within Pf6N2E2_2470at 2918.642 kb on + strand, within Pf6N2E2_2470at 2918.642 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.990 kb on + strand, within Pf6N2E2_2470at 2918.991 kb on - strand, within Pf6N2E2_2470at 2919.032 kb on + strand, within Pf6N2E2_2470at 2919.033 kb on - strand, within Pf6N2E2_2470at 2919.033 kb on - strand, within Pf6N2E2_2470

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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2,916,104 + +0.6
2,916,104 + +0.4
2,916,104 + -0.2
2,916,104 + -0.8
2,916,104 + +0.2
2,916,105 - +0.2
2,916,105 - +0.2
2,916,105 - -0.8
2,916,328 + Pf6N2E2_2467 0.19 -1.3
2,916,329 - Pf6N2E2_2467 0.19 -0.8
2,916,398 - Pf6N2E2_2467 0.26 -0.8
2,916,541 - Pf6N2E2_2467 0.42 +0.2
2,916,726 + Pf6N2E2_2467 0.63 +0.2
2,916,981 + -0.8
2,916,981 + +0.2
2,916,981 + +0.2
2,916,981 + -1.8
2,916,982 - -0.8
2,916,982 - +0.2
2,917,092 + +0.2
2,917,092 + -0.8
2,917,093 - -0.8
2,917,093 - -0.3
2,917,095 - +0.2
2,917,095 - -1.9
2,917,095 - +0.2
2,917,121 + -0.3
2,917,122 - -0.8
2,917,122 - +0.2
2,917,122 - +0.2
2,917,122 - -1.8
2,917,184 + Pf6N2E2_2468 0.10 +0.2
2,917,185 - Pf6N2E2_2468 0.11 +0.2
2,917,220 + Pf6N2E2_2468 0.14 +0.2
2,917,221 - Pf6N2E2_2468 0.14 +0.2
2,917,221 - -0.8
2,917,229 + Pf6N2E2_2468 0.15 +0.2
2,917,229 + Pf6N2E2_2468 0.15 +0.2
2,917,229 + Pf6N2E2_2468 0.15 +0.2
2,917,229 + Pf6N2E2_2468 0.15 -0.8
2,917,230 - Pf6N2E2_2468 0.15 +0.2
2,917,245 - Pf6N2E2_2468 0.17 -1.3
2,917,277 + Pf6N2E2_2468 0.20 +0.2
2,917,278 - Pf6N2E2_2468 0.20 -0.8
2,917,300 - Pf6N2E2_2468 0.23 -0.8
2,917,365 + Pf6N2E2_2468 0.29 -0.8
2,917,392 + Pf6N2E2_2468 0.32 -1.3
2,917,425 - Pf6N2E2_2468 0.36 -1.3
2,917,425 - Pf6N2E2_2468 0.36 -1.3
2,917,425 - Pf6N2E2_2468 0.36 -2.6
2,918,056 - -0.3
2,918,073 + +0.2
2,918,073 + -1.0
2,918,073 + -0.8
2,918,107 + +0.2
2,918,107 + +0.2
2,918,107 + -1.3
2,918,107 + -0.8
2,918,107 + -0.8
2,918,107 + -0.6
2,918,107 + +0.2
2,918,107 + -0.8
2,918,108 - +0.2
2,918,108 - +0.2
2,918,161 + Pf6N2E2_2469 0.36 -0.8
2,918,162 - Pf6N2E2_2469 0.36 +0.2
2,918,162 - Pf6N2E2_2469 0.36 -1.6
2,918,163 + Pf6N2E2_2469 0.37 +0.2
2,918,172 - Pf6N2E2_2469 0.41 -2.9
2,918,238 - Pf6N2E2_2469 0.74 -2.9
2,918,238 - Pf6N2E2_2469 0.74 -2.7
2,918,300 - +0.2
2,918,333 - +0.2
2,918,523 - Pf6N2E2_2470 0.20 +0.2
2,918,570 + Pf6N2E2_2470 0.25 -1.3
2,918,570 + Pf6N2E2_2470 0.25 -0.8
2,918,570 + Pf6N2E2_2470 0.25 -1.5
2,918,570 + Pf6N2E2_2470 0.25 +0.2
2,918,571 - Pf6N2E2_2470 0.25 -2.4
2,918,571 - Pf6N2E2_2470 0.25 +0.2
2,918,588 + Pf6N2E2_2470 0.26 +0.2
2,918,588 + Pf6N2E2_2470 0.26 -1.7
2,918,588 + Pf6N2E2_2470 0.26 +1.2
2,918,589 - Pf6N2E2_2470 0.26 +0.2
2,918,642 + Pf6N2E2_2470 0.31 -0.8
2,918,642 + Pf6N2E2_2470 0.31 -1.9
2,918,762 + Pf6N2E2_2470 0.42 -1.4
2,918,762 + Pf6N2E2_2470 0.42 -2.7
2,918,762 + Pf6N2E2_2470 0.42 -1.3
2,918,762 + Pf6N2E2_2470 0.42 -0.8
2,918,763 - Pf6N2E2_2470 0.42 -0.8
2,918,763 - Pf6N2E2_2470 0.42 +0.2
2,918,763 - Pf6N2E2_2470 0.42 -1.8
2,918,763 - Pf6N2E2_2470 0.42 +0.2
2,918,990 + Pf6N2E2_2470 0.64 -2.2
2,918,991 - Pf6N2E2_2470 0.64 +0.2
2,919,032 + Pf6N2E2_2470 0.67 -0.8
2,919,033 - Pf6N2E2_2470 0.68 +0.2
2,919,033 - Pf6N2E2_2470 0.68 +0.2

Or see this region's nucleotide sequence