Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5399

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5397 and Pf6N2E2_5398 are separated by 232 nucleotidesPf6N2E2_5398 and Pf6N2E2_5399 are separated by 1 nucleotidesPf6N2E2_5399 and Pf6N2E2_5400 are separated by 137 nucleotides Pf6N2E2_5397 - Sarcosine oxidase beta subunit (EC 1.5.3.1), at 6,202,521 to 6,203,477 _5397 Pf6N2E2_5398 - Ornithine cyclodeaminase (EC 4.3.1.12), at 6,203,710 to 6,203,892 _5398 Pf6N2E2_5399 - Ornithine cyclodeaminase (EC 4.3.1.12), at 6,203,894 to 6,204,661 _5399 Pf6N2E2_5400 - ATP-dependent RNA helicase RhlB, at 6,204,799 to 6,206,274 _5400 Position (kb) 6203 6204 6205Strain fitness (log2 ratio) -3 -2 -1 0 1at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6203.178 kb on - strand, within Pf6N2E2_5397at 6203.178 kb on - strand, within Pf6N2E2_5397at 6203.188 kb on + strand, within Pf6N2E2_5397at 6203.188 kb on + strand, within Pf6N2E2_5397at 6203.189 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.342 kb on - strand, within Pf6N2E2_5397at 6203.502 kb on + strandat 6203.504 kb on + strandat 6203.504 kb on + strandat 6203.504 kb on + strandat 6203.504 kb on + strandat 6203.505 kb on - strandat 6203.505 kb on - strandat 6203.505 kb on - strandat 6203.535 kb on - strandat 6203.535 kb on - strandat 6203.535 kb on - strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.566 kb on + strandat 6203.993 kb on - strand, within Pf6N2E2_5399at 6203.993 kb on - strand, within Pf6N2E2_5399at 6204.186 kb on + strand, within Pf6N2E2_5399at 6204.187 kb on - strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.225 kb on + strand, within Pf6N2E2_5399at 6204.226 kb on - strand, within Pf6N2E2_5399at 6204.226 kb on - strand, within Pf6N2E2_5399at 6204.226 kb on - strand, within Pf6N2E2_5399at 6204.438 kb on + strand, within Pf6N2E2_5399at 6204.438 kb on + strand, within Pf6N2E2_5399at 6204.438 kb on + strand, within Pf6N2E2_5399at 6204.439 kb on - strand, within Pf6N2E2_5399at 6204.439 kb on - strand, within Pf6N2E2_5399at 6204.439 kb on - strand, within Pf6N2E2_5399at 6204.459 kb on + strand, within Pf6N2E2_5399at 6204.460 kb on - strand, within Pf6N2E2_5399at 6204.460 kb on - strand, within Pf6N2E2_5399at 6204.489 kb on + strand, within Pf6N2E2_5399at 6204.489 kb on + strand, within Pf6N2E2_5399at 6204.490 kb on - strand, within Pf6N2E2_5399at 6204.490 kb on - strand, within Pf6N2E2_5399at 6204.645 kb on + strandat 6204.645 kb on + strandat 6204.645 kb on + strandat 6204.646 kb on - strandat 6204.646 kb on - strandat 6204.646 kb on - strandat 6204.646 kb on - strandat 6204.646 kb on - strandat 6204.776 kb on + strandat 6204.776 kb on + strandat 6204.777 kb on - strandat 6204.800 kb on + strandat 6204.800 kb on + strandat 6204.801 kb on - strandat 6204.801 kb on - strandat 6204.801 kb on - strandat 6204.826 kb on + strandat 6204.827 kb on - strandat 6204.827 kb on - strandat 6204.827 kb on - strandat 6204.827 kb on - strandat 6204.974 kb on + strand, within Pf6N2E2_5400at 6204.974 kb on + strand, within Pf6N2E2_5400at 6204.975 kb on - strand, within Pf6N2E2_5400at 6204.975 kb on - strand, within Pf6N2E2_5400at 6205.250 kb on + strand, within Pf6N2E2_5400at 6205.250 kb on + strand, within Pf6N2E2_5400at 6205.250 kb on + strand, within Pf6N2E2_5400at 6205.250 kb on + strand, within Pf6N2E2_5400at 6205.250 kb on + strand, within Pf6N2E2_5400at 6205.262 kb on + strand, within Pf6N2E2_5400at 6205.262 kb on + strand, within Pf6N2E2_5400at 6205.262 kb on + strand, within Pf6N2E2_5400at 6205.262 kb on + strand, within Pf6N2E2_5400at 6205.262 kb on + strand, within Pf6N2E2_5400at 6205.263 kb on - strand, within Pf6N2E2_5400at 6205.263 kb on - strand, within Pf6N2E2_5400at 6205.263 kb on - strand, within Pf6N2E2_5400at 6205.263 kb on - strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.286 kb on + strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.287 kb on - strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.290 kb on + strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400at 6205.291 kb on - strand, within Pf6N2E2_5400

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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6,202,898 + Pf6N2E2_5397 0.39 +0.8
6,202,898 + Pf6N2E2_5397 0.39 +0.4
6,202,898 + Pf6N2E2_5397 0.39 +0.4
6,202,899 - Pf6N2E2_5397 0.39 -0.6
6,202,899 - Pf6N2E2_5397 0.39 +0.4
6,202,899 - Pf6N2E2_5397 0.39 +0.4
6,202,899 - Pf6N2E2_5397 0.39 -0.3
6,202,899 - Pf6N2E2_5397 0.39 -0.6
6,202,899 - Pf6N2E2_5397 0.39 -1.6
6,202,900 + Pf6N2E2_5397 0.40 -0.6
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 +0.6
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 -0.6
6,202,900 + Pf6N2E2_5397 0.40 -1.5
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,901 - Pf6N2E2_5397 0.40 +0.4
6,202,901 - Pf6N2E2_5397 0.40 +0.4
6,202,901 - Pf6N2E2_5397 0.40 -0.6
6,202,901 - Pf6N2E2_5397 0.40 -0.6
6,202,901 - Pf6N2E2_5397 0.40 +0.4
6,202,901 - Pf6N2E2_5397 0.40 +0.4
6,202,901 - Pf6N2E2_5397 0.40 -0.6
6,202,901 - Pf6N2E2_5397 0.40 -0.6
6,202,901 - Pf6N2E2_5397 0.40 -0.4
6,203,178 - Pf6N2E2_5397 0.69 -1.0
6,203,178 - Pf6N2E2_5397 0.69 -0.6
6,203,188 + Pf6N2E2_5397 0.70 -1.0
6,203,188 + Pf6N2E2_5397 0.70 -0.3
6,203,189 - Pf6N2E2_5397 0.70 +0.4
6,203,237 - Pf6N2E2_5397 0.75 -0.6
6,203,237 - Pf6N2E2_5397 0.75 +0.4
6,203,237 - Pf6N2E2_5397 0.75 -1.2
6,203,237 - Pf6N2E2_5397 0.75 -0.4
6,203,237 - Pf6N2E2_5397 0.75 +0.4
6,203,237 - Pf6N2E2_5397 0.75 -1.3
6,203,237 - Pf6N2E2_5397 0.75 -1.6
6,203,342 - Pf6N2E2_5397 0.86 -1.4
6,203,502 + +0.4
6,203,504 + -0.6
6,203,504 + -2.1
6,203,504 + -0.6
6,203,504 + +0.4
6,203,505 - +0.4
6,203,505 - -0.0
6,203,505 - -0.9
6,203,535 - -0.3
6,203,535 - +0.4
6,203,535 - +0.4
6,203,566 + +0.4
6,203,566 + +0.4
6,203,566 + -0.6
6,203,566 + -1.6
6,203,566 + -0.2
6,203,566 + +0.4
6,203,566 + -0.3
6,203,566 + +0.4
6,203,566 + +0.4
6,203,566 + -0.6
6,203,993 - Pf6N2E2_5399 0.13 +0.4
6,203,993 - Pf6N2E2_5399 0.13 -0.6
6,204,186 + Pf6N2E2_5399 0.38 -0.6
6,204,187 - Pf6N2E2_5399 0.38 +0.4
6,204,225 + Pf6N2E2_5399 0.43 +1.4
6,204,225 + Pf6N2E2_5399 0.43 -0.6
6,204,225 + Pf6N2E2_5399 0.43 +0.9
6,204,225 + Pf6N2E2_5399 0.43 +0.4
6,204,225 + Pf6N2E2_5399 0.43 +0.4
6,204,225 + Pf6N2E2_5399 0.43 +0.4
6,204,225 + Pf6N2E2_5399 0.43 -0.6
6,204,225 + Pf6N2E2_5399 0.43 -1.6
6,204,226 - Pf6N2E2_5399 0.43 -1.6
6,204,226 - Pf6N2E2_5399 0.43 +0.4
6,204,226 - Pf6N2E2_5399 0.43 -0.6
6,204,438 + Pf6N2E2_5399 0.71 -1.5
6,204,438 + Pf6N2E2_5399 0.71 -0.3
6,204,438 + Pf6N2E2_5399 0.71 -1.2
6,204,439 - Pf6N2E2_5399 0.71 -1.0
6,204,439 - Pf6N2E2_5399 0.71 -0.4
6,204,439 - Pf6N2E2_5399 0.71 -1.2
6,204,459 + Pf6N2E2_5399 0.74 -1.2
6,204,460 - Pf6N2E2_5399 0.74 -0.1
6,204,460 - Pf6N2E2_5399 0.74 -0.6
6,204,489 + Pf6N2E2_5399 0.77 -0.6
6,204,489 + Pf6N2E2_5399 0.77 -0.9
6,204,490 - Pf6N2E2_5399 0.78 -0.6
6,204,490 - Pf6N2E2_5399 0.78 -1.2
6,204,645 + -0.9
6,204,645 + -1.2
6,204,645 + +0.4
6,204,646 - +0.4
6,204,646 - -0.6
6,204,646 - -0.6
6,204,646 - -0.6
6,204,646 - +0.4
6,204,776 + -0.6
6,204,776 + +0.4
6,204,777 - -0.6
6,204,800 + -1.4
6,204,800 + +0.4
6,204,801 - -0.6
6,204,801 - -0.5
6,204,801 - -0.3
6,204,826 + +1.4
6,204,827 - -1.6
6,204,827 - +0.4
6,204,827 - +0.4
6,204,827 - +0.4
6,204,974 + Pf6N2E2_5400 0.12 -1.6
6,204,974 + Pf6N2E2_5400 0.12 -1.2
6,204,975 - Pf6N2E2_5400 0.12 -0.6
6,204,975 - Pf6N2E2_5400 0.12 -0.6
6,205,250 + Pf6N2E2_5400 0.31 +0.4
6,205,250 + Pf6N2E2_5400 0.31 -0.6
6,205,250 + Pf6N2E2_5400 0.31 +0.4
6,205,250 + Pf6N2E2_5400 0.31 -1.3
6,205,250 + Pf6N2E2_5400 0.31 +0.4
6,205,262 + Pf6N2E2_5400 0.31 -0.6
6,205,262 + Pf6N2E2_5400 0.31 +0.4
6,205,262 + Pf6N2E2_5400 0.31 +0.4
6,205,262 + Pf6N2E2_5400 0.31 +0.6
6,205,262 + Pf6N2E2_5400 0.31 -0.6
6,205,263 - Pf6N2E2_5400 0.31 -1.2
6,205,263 - Pf6N2E2_5400 0.31 -0.6
6,205,263 - Pf6N2E2_5400 0.31 -1.0
6,205,263 - Pf6N2E2_5400 0.31 -1.8
6,205,286 + Pf6N2E2_5400 0.33 -0.6
6,205,286 + Pf6N2E2_5400 0.33 -0.6
6,205,286 + Pf6N2E2_5400 0.33 +0.4
6,205,286 + Pf6N2E2_5400 0.33 -1.2
6,205,286 + Pf6N2E2_5400 0.33 -0.4
6,205,286 + Pf6N2E2_5400 0.33 -0.6
6,205,287 - Pf6N2E2_5400 0.33 -1.9
6,205,287 - Pf6N2E2_5400 0.33 -3.7
6,205,287 - Pf6N2E2_5400 0.33 +0.4
6,205,287 - Pf6N2E2_5400 0.33 -0.5
6,205,287 - Pf6N2E2_5400 0.33 +0.4
6,205,287 - Pf6N2E2_5400 0.33 +0.4
6,205,287 - Pf6N2E2_5400 0.33 -0.6
6,205,287 - Pf6N2E2_5400 0.33 +0.4
6,205,290 + Pf6N2E2_5400 0.33 +0.4
6,205,290 + Pf6N2E2_5400 0.33 +0.4
6,205,290 + Pf6N2E2_5400 0.33 -0.6
6,205,290 + Pf6N2E2_5400 0.33 -1.2
6,205,290 + Pf6N2E2_5400 0.33 +1.4
6,205,290 + Pf6N2E2_5400 0.33 -1.6
6,205,290 + Pf6N2E2_5400 0.33 +0.4
6,205,290 + Pf6N2E2_5400 0.33 -0.6
6,205,290 + Pf6N2E2_5400 0.33 -0.6
6,205,290 + Pf6N2E2_5400 0.33 -0.6
6,205,290 + Pf6N2E2_5400 0.33 +0.4
6,205,290 + Pf6N2E2_5400 0.33 -0.6
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 -0.6
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 -1.9
6,205,291 - Pf6N2E2_5400 0.33 -0.6
6,205,291 - Pf6N2E2_5400 0.33 -0.9
6,205,291 - Pf6N2E2_5400 0.33 -0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 -1.2
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 -0.0
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 +0.4
6,205,291 - Pf6N2E2_5400 0.33 -0.6

Or see this region's nucleotide sequence