Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5026

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5025 and Pf6N2E2_5026 are separated by 71 nucleotidesPf6N2E2_5026 and Pf6N2E2_5027 are separated by 128 nucleotides Pf6N2E2_5025 - Sensor histidine kinase, at 5,790,562 to 5,792,946 _5025 Pf6N2E2_5026 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 5,793,018 to 5,794,667 _5026 Pf6N2E2_5027 - AMP nucleosidase (EC 3.2.2.4), at 5,794,796 to 5,796,259 _5027 Position (kb) 5793 5794 5795Strain fitness (log2 ratio) -2 -1 0 1at 5792.020 kb on + strand, within Pf6N2E2_5025at 5792.305 kb on - strand, within Pf6N2E2_5025at 5792.330 kb on - strand, within Pf6N2E2_5025at 5792.330 kb on - strand, within Pf6N2E2_5025at 5792.854 kb on + strandat 5792.855 kb on - strandat 5792.940 kb on + strandat 5792.941 kb on - strandat 5792.941 kb on - strandat 5792.944 kb on + strandat 5792.952 kb on + strandat 5792.984 kb on + strandat 5792.984 kb on + strandat 5792.985 kb on - strandat 5792.985 kb on - strandat 5792.985 kb on - strandat 5792.985 kb on - strandat 5793.165 kb on + strandat 5793.288 kb on + strand, within Pf6N2E2_5026at 5793.288 kb on + strand, within Pf6N2E2_5026at 5793.288 kb on + strand, within Pf6N2E2_5026at 5793.288 kb on + strand, within Pf6N2E2_5026at 5793.289 kb on - strand, within Pf6N2E2_5026at 5793.289 kb on - strand, within Pf6N2E2_5026at 5793.387 kb on + strand, within Pf6N2E2_5026at 5793.387 kb on + strand, within Pf6N2E2_5026at 5793.387 kb on + strand, within Pf6N2E2_5026at 5793.387 kb on + strand, within Pf6N2E2_5026at 5793.387 kb on + strand, within Pf6N2E2_5026at 5793.388 kb on - strand, within Pf6N2E2_5026at 5793.388 kb on - strand, within Pf6N2E2_5026at 5793.388 kb on - strand, within Pf6N2E2_5026at 5793.388 kb on - strand, within Pf6N2E2_5026at 5793.388 kb on - strand, within Pf6N2E2_5026at 5793.513 kb on + strand, within Pf6N2E2_5026at 5793.514 kb on - strand, within Pf6N2E2_5026at 5793.654 kb on + strand, within Pf6N2E2_5026at 5793.655 kb on - strand, within Pf6N2E2_5026at 5793.655 kb on - strand, within Pf6N2E2_5026at 5793.655 kb on - strand, within Pf6N2E2_5026at 5793.655 kb on - strand, within Pf6N2E2_5026at 5793.789 kb on + strand, within Pf6N2E2_5026at 5793.789 kb on + strand, within Pf6N2E2_5026at 5793.789 kb on + strand, within Pf6N2E2_5026at 5793.789 kb on + strand, within Pf6N2E2_5026at 5793.790 kb on - strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.180 kb on - strand, within Pf6N2E2_5026at 5794.180 kb on - strand, within Pf6N2E2_5026at 5794.275 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.473 kb on + strand, within Pf6N2E2_5026at 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.600 kb on - strandat 5794.600 kb on - strandat 5794.600 kb on - strandat 5794.665 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.973 kb on + strand, within Pf6N2E2_5027at 5795.013 kb on - strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.074 kb on + strand, within Pf6N2E2_5027at 5795.074 kb on + strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.078 kb on + strand, within Pf6N2E2_5027at 5795.078 kb on + strand, within Pf6N2E2_5027at 5795.079 kb on - strand, within Pf6N2E2_5027at 5795.079 kb on - strand, within Pf6N2E2_5027at 5795.165 kb on + strand, within Pf6N2E2_5027at 5795.165 kb on + strand, within Pf6N2E2_5027at 5795.166 kb on - strand, within Pf6N2E2_5027at 5795.282 kb on + strand, within Pf6N2E2_5027at 5795.282 kb on + strand, within Pf6N2E2_5027at 5795.283 kb on - strand, within Pf6N2E2_5027at 5795.366 kb on + strand, within Pf6N2E2_5027at 5795.367 kb on - strand, within Pf6N2E2_5027at 5795.367 kb on - strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.426 kb on + strand, within Pf6N2E2_5027at 5795.427 kb on - strand, within Pf6N2E2_5027at 5795.592 kb on - strand, within Pf6N2E2_5027at 5795.592 kb on - strand, within Pf6N2E2_5027

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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5,792,020 + Pf6N2E2_5025 0.61 -0.0
5,792,305 - Pf6N2E2_5025 0.73 -1.9
5,792,330 - Pf6N2E2_5025 0.74 +0.4
5,792,330 - Pf6N2E2_5025 0.74 +0.4
5,792,854 + -1.6
5,792,855 - +0.4
5,792,940 + -1.9
5,792,941 - +0.4
5,792,941 - +0.4
5,792,944 + +0.4
5,792,952 + -0.6
5,792,984 + -0.1
5,792,984 + -0.6
5,792,985 - -1.6
5,792,985 - +0.1
5,792,985 - -0.6
5,792,985 - -1.6
5,793,165 + -1.6
5,793,288 + Pf6N2E2_5026 0.16 -0.6
5,793,288 + Pf6N2E2_5026 0.16 -0.6
5,793,288 + Pf6N2E2_5026 0.16 -0.6
5,793,288 + Pf6N2E2_5026 0.16 -0.6
5,793,289 - Pf6N2E2_5026 0.16 +0.4
5,793,289 - Pf6N2E2_5026 0.16 +0.4
5,793,387 + Pf6N2E2_5026 0.22 +0.4
5,793,387 + Pf6N2E2_5026 0.22 -0.9
5,793,387 + Pf6N2E2_5026 0.22 +0.4
5,793,387 + Pf6N2E2_5026 0.22 -0.6
5,793,387 + Pf6N2E2_5026 0.22 -1.6
5,793,388 - Pf6N2E2_5026 0.22 -1.2
5,793,388 - Pf6N2E2_5026 0.22 -1.2
5,793,388 - Pf6N2E2_5026 0.22 +0.4
5,793,388 - Pf6N2E2_5026 0.22 -0.6
5,793,388 - Pf6N2E2_5026 0.22 -0.6
5,793,513 + Pf6N2E2_5026 0.30 -0.6
5,793,514 - Pf6N2E2_5026 0.30 -0.4
5,793,654 + Pf6N2E2_5026 0.39 +0.4
5,793,655 - Pf6N2E2_5026 0.39 +0.4
5,793,655 - Pf6N2E2_5026 0.39 +0.4
5,793,655 - Pf6N2E2_5026 0.39 +0.4
5,793,655 - Pf6N2E2_5026 0.39 +0.4
5,793,789 + Pf6N2E2_5026 0.47 -1.3
5,793,789 + Pf6N2E2_5026 0.47 +0.4
5,793,789 + Pf6N2E2_5026 0.47 -2.2
5,793,789 + Pf6N2E2_5026 0.47 -0.6
5,793,790 - Pf6N2E2_5026 0.47 -1.2
5,794,179 + Pf6N2E2_5026 0.70 -0.0
5,794,179 + Pf6N2E2_5026 0.70 +0.4
5,794,179 + Pf6N2E2_5026 0.70 -0.6
5,794,179 + Pf6N2E2_5026 0.70 -1.6
5,794,180 - Pf6N2E2_5026 0.70 +0.1
5,794,180 - Pf6N2E2_5026 0.70 -0.6
5,794,275 + Pf6N2E2_5026 0.76 -0.7
5,794,375 + Pf6N2E2_5026 0.82 -0.3
5,794,375 + Pf6N2E2_5026 0.82 +0.4
5,794,375 + Pf6N2E2_5026 0.82 -0.6
5,794,473 + Pf6N2E2_5026 0.88 -1.8
5,794,599 + -0.6
5,794,599 + -0.4
5,794,599 + -1.2
5,794,599 + +0.4
5,794,599 + -2.4
5,794,600 - -0.6
5,794,600 - -0.6
5,794,600 - +0.4
5,794,665 + +0.4
5,794,678 + -0.7
5,794,678 + -0.3
5,794,678 + -0.6
5,794,678 + -0.6
5,794,678 + +0.4
5,794,679 - -1.2
5,794,679 - -0.8
5,794,679 - +0.4
5,794,679 - -0.6
5,794,679 - -0.6
5,794,679 - +0.4
5,794,973 + Pf6N2E2_5027 0.12 -0.6
5,795,013 - Pf6N2E2_5027 0.15 +0.4
5,795,039 + Pf6N2E2_5027 0.17 -0.6
5,795,039 + Pf6N2E2_5027 0.17 -0.6
5,795,039 + Pf6N2E2_5027 0.17 -0.6
5,795,040 - Pf6N2E2_5027 0.17 -2.2
5,795,040 - Pf6N2E2_5027 0.17 -1.1
5,795,040 - Pf6N2E2_5027 0.17 +0.3
5,795,040 - Pf6N2E2_5027 0.17 -1.2
5,795,040 - Pf6N2E2_5027 0.17 -0.6
5,795,074 + Pf6N2E2_5027 0.19 +0.4
5,795,074 + Pf6N2E2_5027 0.19 -0.6
5,795,075 - Pf6N2E2_5027 0.19 -0.1
5,795,075 - Pf6N2E2_5027 0.19 +0.4
5,795,075 - Pf6N2E2_5027 0.19 -0.5
5,795,075 - Pf6N2E2_5027 0.19 +0.4
5,795,078 + Pf6N2E2_5027 0.19 -1.0
5,795,078 + Pf6N2E2_5027 0.19 -0.2
5,795,079 - Pf6N2E2_5027 0.19 +0.4
5,795,079 - Pf6N2E2_5027 0.19 +0.4
5,795,165 + Pf6N2E2_5027 0.25 -1.2
5,795,165 + Pf6N2E2_5027 0.25 +0.4
5,795,166 - Pf6N2E2_5027 0.25 -0.6
5,795,282 + Pf6N2E2_5027 0.33 +0.4
5,795,282 + Pf6N2E2_5027 0.33 -1.6
5,795,283 - Pf6N2E2_5027 0.33 +0.4
5,795,366 + Pf6N2E2_5027 0.39 +0.8
5,795,367 - Pf6N2E2_5027 0.39 +0.4
5,795,367 - Pf6N2E2_5027 0.39 -1.0
5,795,417 + Pf6N2E2_5027 0.42 -0.2
5,795,417 + Pf6N2E2_5027 0.42 -0.6
5,795,417 + Pf6N2E2_5027 0.42 -0.6
5,795,417 + Pf6N2E2_5027 0.42 -1.2
5,795,417 + Pf6N2E2_5027 0.42 +0.4
5,795,418 - Pf6N2E2_5027 0.42 +0.4
5,795,418 - Pf6N2E2_5027 0.42 +0.4
5,795,418 - Pf6N2E2_5027 0.42 -0.6
5,795,426 + Pf6N2E2_5027 0.43 -0.6
5,795,427 - Pf6N2E2_5027 0.43 -1.2
5,795,592 - Pf6N2E2_5027 0.54 -1.6
5,795,592 - Pf6N2E2_5027 0.54 -0.6

Or see this region's nucleotide sequence