Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4906

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4905 and Pf6N2E2_4906 overlap by 15 nucleotidesPf6N2E2_4906 and Pf6N2E2_4907 are separated by 149 nucleotides Pf6N2E2_4905 - Lhr-like helicases, at 5,659,301 to 5,663,584 _4905 Pf6N2E2_4906 - hypothetical protein, at 5,663,570 to 5,663,692 _4906 Pf6N2E2_4907 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 5,663,842 to 5,664,711 _4907 Position (kb) 5663 5664Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5662.622 kb on + strand, within Pf6N2E2_4905at 5662.622 kb on + strand, within Pf6N2E2_4905at 5662.623 kb on - strand, within Pf6N2E2_4905at 5662.819 kb on - strand, within Pf6N2E2_4905at 5662.819 kb on - strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5663.151 kb on + strand, within Pf6N2E2_4905at 5663.151 kb on + strand, within Pf6N2E2_4905at 5663.152 kb on - strand, within Pf6N2E2_4905at 5663.152 kb on - strand, within Pf6N2E2_4905at 5663.358 kb on + strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.615 kb on - strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.654 kb on - strand, within Pf6N2E2_4906at 5663.654 kb on - strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.660 kb on - strand, within Pf6N2E2_4906at 5663.660 kb on - strand, within Pf6N2E2_4906at 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.740 kb on + strandat 5663.741 kb on - strandat 5663.741 kb on - strandat 5663.806 kb on + strandat 5663.806 kb on + strandat 5663.807 kb on - strandat 5663.826 kb on + strandat 5663.827 kb on - strandat 5663.827 kb on - strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.846 kb on + strandat 5663.847 kb on - strandat 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.008 kb on - strand, within Pf6N2E2_4907at 5664.008 kb on - strand, within Pf6N2E2_4907at 5664.010 kb on + strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.134 kb on - strand, within Pf6N2E2_4907at 5664.166 kb on + strand, within Pf6N2E2_4907at 5664.166 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.463 kb on + strand, within Pf6N2E2_4907at 5664.463 kb on + strand, within Pf6N2E2_4907at 5664.464 kb on - strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.484 kb on - strand, within Pf6N2E2_4907at 5664.691 kb on - strandat 5664.691 kb on - strandat 5664.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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5,662,622 + Pf6N2E2_4905 0.78 -1.1
5,662,622 + Pf6N2E2_4905 0.78 -0.6
5,662,623 - Pf6N2E2_4905 0.78 -1.1
5,662,819 - Pf6N2E2_4905 0.82 +0.4
5,662,819 - Pf6N2E2_4905 0.82 -1.4
5,662,877 + Pf6N2E2_4905 0.83 -0.6
5,662,877 + Pf6N2E2_4905 0.83 -1.1
5,662,877 + Pf6N2E2_4905 0.83 -0.4
5,662,877 + Pf6N2E2_4905 0.83 +0.4
5,662,877 + Pf6N2E2_4905 0.83 -0.6
5,662,878 - Pf6N2E2_4905 0.83 +0.4
5,662,878 - Pf6N2E2_4905 0.83 +0.4
5,662,878 - Pf6N2E2_4905 0.83 +0.4
5,662,878 - Pf6N2E2_4905 0.83 -0.6
5,662,878 - Pf6N2E2_4905 0.83 -0.2
5,662,927 + Pf6N2E2_4905 0.85 -0.6
5,662,927 + Pf6N2E2_4905 0.85 +0.0
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 +1.0
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 -1.1
5,662,927 + Pf6N2E2_4905 0.85 -1.1
5,662,928 - Pf6N2E2_4905 0.85 +0.4
5,662,928 - Pf6N2E2_4905 0.85 -0.6
5,662,928 - Pf6N2E2_4905 0.85 +0.4
5,662,928 - Pf6N2E2_4905 0.85 -0.6
5,662,928 - Pf6N2E2_4905 0.85 +0.4
5,662,928 - Pf6N2E2_4905 0.85 -0.6
5,662,928 - Pf6N2E2_4905 0.85 -1.6
5,663,151 + Pf6N2E2_4905 0.90 +0.7
5,663,151 + Pf6N2E2_4905 0.90 -0.6
5,663,152 - Pf6N2E2_4905 0.90 -0.6
5,663,152 - Pf6N2E2_4905 0.90 +0.4
5,663,358 + -0.1
5,663,359 - +0.4
5,663,359 - -0.6
5,663,359 - -1.9
5,663,359 - +0.4
5,663,614 + Pf6N2E2_4906 0.36 +0.4
5,663,614 + Pf6N2E2_4906 0.36 -0.4
5,663,614 + Pf6N2E2_4906 0.36 -0.9
5,663,615 - Pf6N2E2_4906 0.37 -0.6
5,663,653 + Pf6N2E2_4906 0.67 -1.1
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,653 + Pf6N2E2_4906 0.67 -1.1
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,654 - Pf6N2E2_4906 0.68 -2.4
5,663,654 - Pf6N2E2_4906 0.68 -0.6
5,663,659 + Pf6N2E2_4906 0.72 -1.1
5,663,659 + Pf6N2E2_4906 0.72 +0.4
5,663,659 + Pf6N2E2_4906 0.72 -1.1
5,663,659 + Pf6N2E2_4906 0.72 -1.1
5,663,659 + Pf6N2E2_4906 0.72 -1.6
5,663,659 + Pf6N2E2_4906 0.72 +0.0
5,663,660 - Pf6N2E2_4906 0.73 -0.6
5,663,660 - Pf6N2E2_4906 0.73 +0.4
5,663,690 + -1.2
5,663,690 + -1.1
5,663,690 + +0.4
5,663,690 + +0.4
5,663,691 - -0.6
5,663,691 - -0.6
5,663,691 - -3.7
5,663,691 - -2.8
5,663,740 + -0.1
5,663,741 - +0.4
5,663,741 - -0.6
5,663,806 + -1.0
5,663,806 + +0.4
5,663,807 - -4.5
5,663,826 + -0.6
5,663,827 - -0.6
5,663,827 - +0.4
5,663,841 + -3.3
5,663,841 + -5.4
5,663,841 + -1.9
5,663,841 + +0.4
5,663,841 + -3.7
5,663,841 + -2.1
5,663,841 + -3.8
5,663,842 - -3.8
5,663,842 - +0.4
5,663,842 - -6.3
5,663,842 - +0.4
5,663,842 - -0.6
5,663,842 - -0.6
5,663,846 + -3.5
5,663,847 - +0.4
5,664,007 + Pf6N2E2_4907 0.19 +0.4
5,664,007 + Pf6N2E2_4907 0.19 +0.4
5,664,007 + Pf6N2E2_4907 0.19 -2.4
5,664,008 - Pf6N2E2_4907 0.19 -3.9
5,664,008 - Pf6N2E2_4907 0.19 -2.7
5,664,010 + Pf6N2E2_4907 0.19 +0.4
5,664,011 - Pf6N2E2_4907 0.19 -4.2
5,664,011 - Pf6N2E2_4907 0.19 -1.6
5,664,011 - Pf6N2E2_4907 0.19 +0.4
5,664,011 - Pf6N2E2_4907 0.19 +0.4
5,664,011 - Pf6N2E2_4907 0.19 -3.0
5,664,134 - Pf6N2E2_4907 0.34 -3.6
5,664,166 + Pf6N2E2_4907 0.37 +0.4
5,664,166 + Pf6N2E2_4907 0.37 +0.4
5,664,457 + Pf6N2E2_4907 0.71 -2.4
5,664,457 + Pf6N2E2_4907 0.71 -1.6
5,664,457 + Pf6N2E2_4907 0.71 -5.1
5,664,457 + Pf6N2E2_4907 0.71 -4.1
5,664,457 + Pf6N2E2_4907 0.71 +0.4
5,664,457 + Pf6N2E2_4907 0.71 -2.4
5,664,457 + Pf6N2E2_4907 0.71 -4.0
5,664,457 + Pf6N2E2_4907 0.71 -4.0
5,664,457 + Pf6N2E2_4907 0.71 -1.1
5,664,457 + Pf6N2E2_4907 0.71 +0.4
5,664,458 - Pf6N2E2_4907 0.71 -2.1
5,664,458 - Pf6N2E2_4907 0.71 -3.3
5,664,458 - Pf6N2E2_4907 0.71 -1.1
5,664,458 - Pf6N2E2_4907 0.71 -1.6
5,664,458 - Pf6N2E2_4907 0.71 -3.3
5,664,463 + Pf6N2E2_4907 0.71 -3.0
5,664,463 + Pf6N2E2_4907 0.71 -1.7
5,664,464 - Pf6N2E2_4907 0.71 -4.5
5,664,483 + Pf6N2E2_4907 0.74 -1.9
5,664,483 + Pf6N2E2_4907 0.74 -0.6
5,664,483 + Pf6N2E2_4907 0.74 +0.4
5,664,483 + Pf6N2E2_4907 0.74 +0.4
5,664,484 - Pf6N2E2_4907 0.74 -1.9
5,664,691 - -0.6
5,664,691 - -1.6
5,664,691 - -1.1

Or see this region's nucleotide sequence