Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_683 and Pf6N2E2_684 are separated by 137 nucleotides Pf6N2E2_684 and Pf6N2E2_685 are separated by 200 nucleotides
Pf6N2E2_683 - Probable MFS transporter, at 787,752 to 788,918
_683
Pf6N2E2_684 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 789,056 to 790,447
_684
Pf6N2E2_685 - Ferrichrome-iron receptor, at 790,648 to 792,777
_685
Position (kb) 789
790
791 Strain fitness (log2 ratio) -1
0
1 at 788.092 kb on + strand, within Pf6N2E2_683 at 788.190 kb on - strand, within Pf6N2E2_683 at 788.564 kb on + strand, within Pf6N2E2_683 at 788.564 kb on + strand, within Pf6N2E2_683 at 788.565 kb on - strand, within Pf6N2E2_683 at 788.566 kb on + strand, within Pf6N2E2_683 at 788.566 kb on + strand, within Pf6N2E2_683 at 788.567 kb on - strand, within Pf6N2E2_683 at 788.567 kb on - strand, within Pf6N2E2_683 at 788.567 kb on - strand, within Pf6N2E2_683 at 788.567 kb on - strand, within Pf6N2E2_683 at 788.770 kb on + strand, within Pf6N2E2_683 at 788.770 kb on + strand, within Pf6N2E2_683 at 788.771 kb on - strand, within Pf6N2E2_683 at 788.771 kb on - strand, within Pf6N2E2_683 at 788.824 kb on + strand at 788.833 kb on + strand at 788.834 kb on - strand at 788.930 kb on - strand at 788.957 kb on + strand at 788.957 kb on + strand at 789.009 kb on + strand at 789.009 kb on + strand at 789.009 kb on + strand at 789.010 kb on - strand at 789.224 kb on + strand, within Pf6N2E2_684 at 789.225 kb on - strand, within Pf6N2E2_684 at 789.473 kb on + strand, within Pf6N2E2_684 at 789.473 kb on + strand, within Pf6N2E2_684 at 789.473 kb on + strand, within Pf6N2E2_684 at 789.473 kb on + strand, within Pf6N2E2_684 at 789.473 kb on + strand, within Pf6N2E2_684 at 789.474 kb on - strand, within Pf6N2E2_684 at 789.474 kb on - strand, within Pf6N2E2_684 at 789.474 kb on - strand, within Pf6N2E2_684 at 789.474 kb on - strand, within Pf6N2E2_684 at 789.654 kb on - strand, within Pf6N2E2_684 at 789.656 kb on + strand, within Pf6N2E2_684 at 789.657 kb on - strand, within Pf6N2E2_684 at 789.657 kb on - strand, within Pf6N2E2_684 at 789.657 kb on - strand at 789.763 kb on + strand, within Pf6N2E2_684 at 789.764 kb on - strand, within Pf6N2E2_684 at 789.764 kb on - strand, within Pf6N2E2_684 at 789.794 kb on + strand, within Pf6N2E2_684 at 789.794 kb on + strand, within Pf6N2E2_684 at 789.794 kb on + strand, within Pf6N2E2_684 at 789.794 kb on + strand, within Pf6N2E2_684 at 789.795 kb on - strand, within Pf6N2E2_684 at 789.795 kb on - strand, within Pf6N2E2_684 at 789.837 kb on - strand, within Pf6N2E2_684 at 789.893 kb on + strand, within Pf6N2E2_684 at 789.959 kb on + strand, within Pf6N2E2_684 at 789.959 kb on + strand, within Pf6N2E2_684 at 789.959 kb on + strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 789.960 kb on - strand, within Pf6N2E2_684 at 790.007 kb on + strand, within Pf6N2E2_684 at 790.007 kb on + strand, within Pf6N2E2_684 at 790.008 kb on - strand, within Pf6N2E2_684 at 790.125 kb on - strand, within Pf6N2E2_684 at 790.177 kb on + strand, within Pf6N2E2_684 at 790.177 kb on + strand, within Pf6N2E2_684 at 790.177 kb on + strand, within Pf6N2E2_684 at 790.178 kb on - strand, within Pf6N2E2_684 at 790.376 kb on + strand at 790.376 kb on + strand at 790.377 kb on - strand at 790.446 kb on - strand at 790.634 kb on - strand at 790.634 kb on - strand at 790.687 kb on + strand at 790.688 kb on - strand at 790.688 kb on - strand at 790.777 kb on + strand at 790.778 kb on - strand at 790.940 kb on - strand, within Pf6N2E2_685 at 790.989 kb on + strand, within Pf6N2E2_685 at 790.990 kb on - strand, within Pf6N2E2_685 at 790.990 kb on - strand, within Pf6N2E2_685 at 790.990 kb on - strand, within Pf6N2E2_685 at 791.026 kb on + strand, within Pf6N2E2_685
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 788,092 + Pf6N2E2_683 0.29 -0.2 788,190 - Pf6N2E2_683 0.38 -0.8 788,564 + Pf6N2E2_683 0.70 -0.8 788,564 + Pf6N2E2_683 0.70 -0.8 788,565 - Pf6N2E2_683 0.70 +0.2 788,566 + Pf6N2E2_683 0.70 -0.6 788,566 + Pf6N2E2_683 0.70 +0.2 788,567 - Pf6N2E2_683 0.70 -1.4 788,567 - Pf6N2E2_683 0.70 +0.2 788,567 - Pf6N2E2_683 0.70 +0.2 788,567 - Pf6N2E2_683 0.70 -0.8 788,770 + Pf6N2E2_683 0.87 -1.4 788,770 + Pf6N2E2_683 0.87 -0.3 788,771 - Pf6N2E2_683 0.87 -1.0 788,771 - Pf6N2E2_683 0.87 -0.8 788,824 + -0.8 788,833 + +0.2 788,834 - -0.8 788,930 - +0.2 788,957 + +0.2 788,957 + -1.3 789,009 + -0.8 789,009 + -0.8 789,009 + +0.2 789,010 - -1.4 789,224 + Pf6N2E2_684 0.12 +0.2 789,225 - Pf6N2E2_684 0.12 -1.1 789,473 + Pf6N2E2_684 0.30 +0.2 789,473 + Pf6N2E2_684 0.30 +0.2 789,473 + Pf6N2E2_684 0.30 +0.2 789,473 + Pf6N2E2_684 0.30 -0.4 789,473 + Pf6N2E2_684 0.30 -0.8 789,474 - Pf6N2E2_684 0.30 +0.2 789,474 - Pf6N2E2_684 0.30 +0.2 789,474 - Pf6N2E2_684 0.30 +0.2 789,474 - Pf6N2E2_684 0.30 +0.2 789,654 - Pf6N2E2_684 0.43 +0.2 789,656 + Pf6N2E2_684 0.43 +0.2 789,657 - Pf6N2E2_684 0.43 -0.7 789,657 - Pf6N2E2_684 0.43 -1.2 789,657 - +1.7 789,763 + Pf6N2E2_684 0.51 +0.2 789,764 - Pf6N2E2_684 0.51 +0.2 789,764 - Pf6N2E2_684 0.51 -0.8 789,794 + Pf6N2E2_684 0.53 +0.2 789,794 + Pf6N2E2_684 0.53 -1.4 789,794 + Pf6N2E2_684 0.53 -0.8 789,794 + Pf6N2E2_684 0.53 +0.2 789,795 - Pf6N2E2_684 0.53 -0.8 789,795 - Pf6N2E2_684 0.53 -0.1 789,837 - Pf6N2E2_684 0.56 -1.2 789,893 + Pf6N2E2_684 0.60 +0.2 789,959 + Pf6N2E2_684 0.65 +0.2 789,959 + Pf6N2E2_684 0.65 +0.2 789,959 + Pf6N2E2_684 0.65 +0.2 789,960 - Pf6N2E2_684 0.65 +0.1 789,960 - Pf6N2E2_684 0.65 +0.2 789,960 - Pf6N2E2_684 0.65 -0.6 789,960 - Pf6N2E2_684 0.65 +0.2 789,960 - Pf6N2E2_684 0.65 +0.2 789,960 - Pf6N2E2_684 0.65 +0.7 790,007 + Pf6N2E2_684 0.68 -0.8 790,007 + Pf6N2E2_684 0.68 +0.2 790,008 - Pf6N2E2_684 0.68 -0.8 790,125 - Pf6N2E2_684 0.77 -0.8 790,177 + Pf6N2E2_684 0.81 +0.2 790,177 + Pf6N2E2_684 0.81 +0.2 790,177 + Pf6N2E2_684 0.81 -0.1 790,178 - Pf6N2E2_684 0.81 +0.2 790,376 + +0.2 790,376 + +0.2 790,377 - -0.4 790,446 - -0.6 790,634 - +0.2 790,634 - +0.2 790,687 + +0.1 790,688 - -1.4 790,688 - +0.2 790,777 + +0.2 790,778 - +0.2 790,940 - Pf6N2E2_685 0.14 +0.2 790,989 + Pf6N2E2_685 0.16 +0.2 790,990 - Pf6N2E2_685 0.16 +0.2 790,990 - Pf6N2E2_685 0.16 -0.6 790,990 - Pf6N2E2_685 0.16 -0.8 791,026 + Pf6N2E2_685 0.18 +0.6
Or see this region's nucleotide sequence