Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_664 and Pf6N2E2_665 are separated by 2 nucleotides Pf6N2E2_665 and Pf6N2E2_666 are separated by 36 nucleotides
Pf6N2E2_664 - Acetoin catabolism protein X, at 768,952 to 770,025
_664
Pf6N2E2_665 - Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-), at 770,028 to 771,005
_665
Pf6N2E2_666 - Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-), at 771,042 to 772,058
_666
Position (kb) 770
771
772 Strain fitness (log2 ratio) -2
-1
0
1 at 769.432 kb on + strand, within Pf6N2E2_664 at 769.433 kb on - strand, within Pf6N2E2_664 at 769.433 kb on - strand, within Pf6N2E2_664 at 769.939 kb on + strand at 770.155 kb on - strand, within Pf6N2E2_665 at 770.155 kb on - strand, within Pf6N2E2_665 at 770.289 kb on + strand, within Pf6N2E2_665 at 770.289 kb on + strand, within Pf6N2E2_665 at 770.290 kb on - strand, within Pf6N2E2_665 at 770.560 kb on - strand, within Pf6N2E2_665 at 770.934 kb on + strand at 770.988 kb on + strand at 770.989 kb on - strand at 770.998 kb on - strand at 771.028 kb on + strand at 771.028 kb on + strand at 771.029 kb on - strand at 771.029 kb on - strand at 771.378 kb on + strand, within Pf6N2E2_666 at 771.379 kb on - strand, within Pf6N2E2_666 at 771.379 kb on - strand, within Pf6N2E2_666 at 771.506 kb on - strand, within Pf6N2E2_666 at 771.506 kb on - strand, within Pf6N2E2_666 at 771.526 kb on - strand, within Pf6N2E2_666 at 771.601 kb on - strand, within Pf6N2E2_666 at 771.633 kb on + strand, within Pf6N2E2_666 at 771.633 kb on + strand, within Pf6N2E2_666 at 771.776 kb on - strand, within Pf6N2E2_666 at 771.884 kb on + strand, within Pf6N2E2_666 at 771.993 kb on + strand at 771.993 kb on + strand at 771.993 kb on + strand at 771.993 kb on + strand at 771.993 kb on + strand at 771.994 kb on - strand at 771.994 kb on - strand at 771.994 kb on - strand at 771.994 kb on - strand at 771.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 769,432 + Pf6N2E2_664 0.45 +0.2 769,433 - Pf6N2E2_664 0.45 -1.4 769,433 - Pf6N2E2_664 0.45 -0.6 769,939 + +0.2 770,155 - Pf6N2E2_665 0.13 -1.4 770,155 - Pf6N2E2_665 0.13 +0.2 770,289 + Pf6N2E2_665 0.27 -1.8 770,289 + Pf6N2E2_665 0.27 -1.4 770,290 - Pf6N2E2_665 0.27 +0.2 770,560 - Pf6N2E2_665 0.54 -1.4 770,934 + +0.2 770,988 + +0.2 770,989 - -1.4 770,998 - -0.8 771,028 + -0.4 771,028 + +0.2 771,029 - -1.2 771,029 - +0.2 771,378 + Pf6N2E2_666 0.33 +0.2 771,379 - Pf6N2E2_666 0.33 -1.4 771,379 - Pf6N2E2_666 0.33 +0.2 771,506 - Pf6N2E2_666 0.46 +0.2 771,506 - Pf6N2E2_666 0.46 -0.6 771,526 - Pf6N2E2_666 0.48 +0.2 771,601 - Pf6N2E2_666 0.55 -0.8 771,633 + Pf6N2E2_666 0.58 -1.6 771,633 + Pf6N2E2_666 0.58 -1.0 771,776 - Pf6N2E2_666 0.72 -0.9 771,884 + Pf6N2E2_666 0.83 +0.2 771,993 + -0.8 771,993 + -1.4 771,993 + +0.2 771,993 + +0.2 771,993 + +0.2 771,994 - -0.6 771,994 - +0.2 771,994 - +0.2 771,994 - -1.2 771,994 - -0.7
Or see this region's nucleotide sequence