Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_634 and Pf6N2E2_635 are separated by 179 nucleotides Pf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotides Pf6N2E2_636 and Pf6N2E2_637 are separated by 125 nucleotides
Pf6N2E2_634 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 722,686 to 727,554
_634
Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138
_635
Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725
_636
Pf6N2E2_637 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 728,851 to 730,284
_637
Position (kb) 728
729 Strain fitness (log2 ratio) -2
-1
0
1 at 727.486 kb on + strand at 727.486 kb on + strand at 727.856 kb on - strand, within Pf6N2E2_635 at 727.876 kb on + strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.984 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.047 kb on - strand, within Pf6N2E2_635 at 728.083 kb on + strand, within Pf6N2E2_635 at 728.084 kb on - strand, within Pf6N2E2_635 at 728.196 kb on + strand at 728.196 kb on + strand at 728.197 kb on - strand at 728.244 kb on + strand at 728.424 kb on - strand at 728.449 kb on + strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.603 kb on - strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.699 kb on + strand at 728.700 kb on - strand at 728.871 kb on + strand at 728.982 kb on - strand at 729.058 kb on - strand, within Pf6N2E2_637 at 729.344 kb on + strand, within Pf6N2E2_637 at 729.453 kb on - strand, within Pf6N2E2_637 at 729.531 kb on - strand, within Pf6N2E2_637
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 727,486 + +0.2 727,486 + -0.0 727,856 - Pf6N2E2_635 0.30 +0.2 727,876 + Pf6N2E2_635 0.35 +0.8 727,877 - Pf6N2E2_635 0.35 -0.8 727,877 - Pf6N2E2_635 0.35 -0.2 727,930 + Pf6N2E2_635 0.48 +0.2 727,930 + Pf6N2E2_635 0.48 -1.4 727,930 + Pf6N2E2_635 0.48 -2.2 727,930 + Pf6N2E2_635 0.48 +0.2 727,931 - Pf6N2E2_635 0.49 +0.2 727,931 - Pf6N2E2_635 0.49 +0.2 727,931 - Pf6N2E2_635 0.49 +0.2 727,931 - Pf6N2E2_635 0.49 -0.7 727,931 - Pf6N2E2_635 0.49 -0.8 727,984 + Pf6N2E2_635 0.62 -0.8 728,046 + Pf6N2E2_635 0.77 -0.8 728,046 + Pf6N2E2_635 0.77 +0.2 728,046 + Pf6N2E2_635 0.77 +0.2 728,047 - Pf6N2E2_635 0.77 -1.1 728,083 + Pf6N2E2_635 0.86 -1.4 728,084 - Pf6N2E2_635 0.86 -2.6 728,196 + -0.7 728,196 + -1.1 728,197 - +0.2 728,244 + -0.1 728,424 - +0.2 728,449 + +0.2 728,450 - -0.7 728,450 - +0.2 728,450 - -1.3 728,602 + Pf6N2E2_636 0.58 +0.2 728,602 + Pf6N2E2_636 0.58 -0.8 728,602 + Pf6N2E2_636 0.58 -0.8 728,602 + Pf6N2E2_636 0.58 +0.2 728,602 + Pf6N2E2_636 0.58 +0.2 728,603 - Pf6N2E2_636 0.58 +0.2 728,604 + Pf6N2E2_636 0.59 -0.9 728,604 + Pf6N2E2_636 0.59 +0.2 728,604 + Pf6N2E2_636 0.59 -1.7 728,604 + Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 -1.4 728,605 - Pf6N2E2_636 0.59 -1.3 728,605 - Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 -1.8 728,699 + +0.2 728,700 - -0.8 728,871 + -1.4 728,982 - +1.2 729,058 - Pf6N2E2_637 0.14 -1.4 729,344 + Pf6N2E2_637 0.34 +0.2 729,453 - Pf6N2E2_637 0.42 -0.8 729,531 - Pf6N2E2_637 0.47 +0.2
Or see this region's nucleotide sequence