Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5704

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
6,518,742	+		Pf6N2E2_5702	0.85	-0.7
6,518,742	+		Pf6N2E2_5702	0.85	-0.7
6,518,748	+		Pf6N2E2_5702	0.85	+0.3
6,518,748	+		Pf6N2E2_5702	0.85	-0.7
6,518,748	+		Pf6N2E2_5702	0.85	+0.3
6,518,748	+		Pf6N2E2_5702	0.85	+0.3
6,518,749	-		Pf6N2E2_5702	0.85	+0.3
6,518,749	-		Pf6N2E2_5702	0.85	-0.7
6,518,751	+		Pf6N2E2_5702	0.86	+0.3
6,518,784	+				-0.6
6,518,840	+				+0.3
6,518,840	+				-0.7
6,518,841	-				+0.3
6,518,841	-				+0.3
6,518,841	-				+0.3
6,518,841	-				-0.7
6,518,841	-				-0.7
6,518,902	-				+0.3
6,518,902	-				-0.3
6,519,197	+		Pf6N2E2_5703	0.31	-0.7
6,519,198	-		Pf6N2E2_5703	0.31	-0.7
6,519,236	+		Pf6N2E2_5703	0.38	-0.7
6,519,249	-		Pf6N2E2_5703	0.40	+0.3
6,519,311	+		Pf6N2E2_5703	0.50	+0.3
6,519,311	+		Pf6N2E2_5703	0.50	-0.7
6,519,311	+		Pf6N2E2_5703	0.50	+0.3
6,519,311	+		Pf6N2E2_5703	0.50	+0.3
6,519,312	-		Pf6N2E2_5703	0.50	+0.3
6,519,491	+				-1.0
6,519,584	+				-0.7
6,519,584	+				-0.7
6,519,584	+				+0.3
6,519,600	-				+0.3
6,519,629	-				+0.3
6,520,006	+		Pf6N2E2_5704	0.43	+0.3
6,520,006	+		Pf6N2E2_5704	0.43	-2.3
6,520,006	+		Pf6N2E2_5704	0.43	-0.7
6,520,006	+		Pf6N2E2_5704	0.43	+0.3
6,520,007	-		Pf6N2E2_5704	0.43	-0.7
6,520,007	-		Pf6N2E2_5704	0.43	-1.3
6,520,007	-		Pf6N2E2_5704	0.43	-0.7
6,520,081	-		Pf6N2E2_5704	0.54	-0.7
6,520,172	-		Pf6N2E2_5704	0.67	+0.3
6,520,177	+		Pf6N2E2_5704	0.68	-0.7
6,520,193	-		Pf6N2E2_5704	0.71	+0.3
6,520,636	-		Pf6N2E2_5705	0.18	-2.3
6,520,641	+		Pf6N2E2_5705	0.19	-1.3
6,520,701	+		Pf6N2E2_5705	0.23	-1.3
6,520,776	+		Pf6N2E2_5705	0.29	-1.1
6,520,830	-		Pf6N2E2_5705	0.33	-1.8