Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5644

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
6,456,605	-				+0.3
6,456,643	+				+0.3
6,456,643	+				-0.7
6,456,644	-				+0.6
6,456,715	-				+0.3
6,456,799	+		Pf6N2E2_5642	0.25	-0.8
6,456,799	+		Pf6N2E2_5642	0.25	-0.6
6,456,799	+		Pf6N2E2_5642	0.25	-1.5
6,456,799	+		Pf6N2E2_5642	0.25	-0.7
6,456,799	+		Pf6N2E2_5642	0.25	-0.4
6,456,799	+		Pf6N2E2_5642	0.25	-1.1
6,456,936	-		Pf6N2E2_5642	0.67	-0.7
6,456,985	+		Pf6N2E2_5642	0.82	+0.3
6,456,985	+		Pf6N2E2_5642	0.82	+0.3
6,456,986	-		Pf6N2E2_5642	0.82	+0.3
6,456,986	-		Pf6N2E2_5642	0.82	-1.0
6,456,986	-		Pf6N2E2_5642	0.82	+0.3
6,456,986	-		Pf6N2E2_5642	0.82	-1.3
6,456,986	-		Pf6N2E2_5642	0.82	-1.3
6,456,986	-		Pf6N2E2_5642	0.82	-0.7
6,457,262	+				-0.5
6,457,262	+				+0.3
6,457,262	+				-1.7
6,457,263	-				-1.3
6,457,263	-				-1.3
6,457,263	-				+0.3
6,457,263	-				-0.6
6,457,263	-				+0.3
6,457,263	-				-0.7
6,457,263	-				-0.7
6,457,263	-				-0.7
6,457,263	-				-0.9
6,457,263	-				-1.3
6,457,283	+				+0.3
6,457,283	+				-0.7
6,457,283	+				+0.3
6,457,284	-				+0.3
6,457,311	+		Pf6N2E2_5643	0.16	+0.3
6,457,323	+		Pf6N2E2_5643	0.20	-0.5
6,457,323	+		Pf6N2E2_5643	0.20	+0.3
6,457,324	-		Pf6N2E2_5643	0.20	-0.3
6,457,324	-		Pf6N2E2_5643	0.20	-0.8
6,457,324	-		Pf6N2E2_5643	0.20	-0.8
6,457,324	-		Pf6N2E2_5643	0.20	-0.6
6,457,325	+		Pf6N2E2_5643	0.20	-0.7
6,457,325	+		Pf6N2E2_5643	0.20	-0.7
6,457,326	-		Pf6N2E2_5643	0.21	+0.3
6,457,409	+		Pf6N2E2_5643	0.47	-0.4
6,457,410	-		Pf6N2E2_5643	0.47	-0.9
6,457,514	+		Pf6N2E2_5643	0.80	-0.7
6,457,559	+				+0.3
6,457,559	+				-0.6
6,457,559	+				-0.7
6,457,559	+				-0.7
6,457,562	+				+0.3
6,457,562	+				+0.3
6,457,822	+		Pf6N2E2_5644	0.35	+0.3
6,457,823	-		Pf6N2E2_5644	0.35	-0.7
6,457,823	-		Pf6N2E2_5644	0.35	+0.3
6,457,823	-		Pf6N2E2_5644	0.35	+0.3
6,457,913	+		Pf6N2E2_5644	0.48	-0.1
6,457,914	-		Pf6N2E2_5644	0.48	-0.7
6,458,115	+		Pf6N2E2_5644	0.76	-0.7
6,458,115	+		Pf6N2E2_5644	0.76	-0.4
6,458,115	+		Pf6N2E2_5644	0.76	-0.7
6,458,115	+		Pf6N2E2_5644	0.76	+0.3
6,458,115	+		Pf6N2E2_5644	0.76	-0.7
6,458,116	-		Pf6N2E2_5644	0.77	-0.2
6,458,116	-		Pf6N2E2_5644	0.77	+0.3
6,458,262	+				+0.2
6,458,262	+				+0.3
6,458,262	+				+0.3
6,458,263	-				-0.7
6,458,263	-				-0.3
6,458,320	+				+0.3
6,458,320	+				+0.3
6,458,320	+				-0.7
6,458,320	+				-0.6
6,458,320	+				-0.7
6,458,321	-				-1.7
6,458,321	-				-0.7
6,458,321	-				+0.3
6,458,344	-				+0.3
6,458,355	+				-0.8
6,458,356	-				-0.7
6,458,356	-				-0.7
6,458,493	+		Pf6N2E2_5645	0.21	-0.7
6,458,494	-		Pf6N2E2_5645	0.21	+0.3
6,458,894	+		Pf6N2E2_5645	0.63	-0.7
6,458,895	-		Pf6N2E2_5645	0.63	-0.8
6,458,895	-		Pf6N2E2_5645	0.63	+0.7
6,458,895	-		Pf6N2E2_5645	0.63	+0.3
6,458,895	-		Pf6N2E2_5645	0.63	-0.9
6,458,912	-		Pf6N2E2_5645	0.65	-0.7
6,459,144	-		Pf6N2E2_5645	0.89	+0.3
6,459,144	-		Pf6N2E2_5645	0.89	+0.3