Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5622

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
6,438,367	+				-0.3
6,438,551	+				-0.3
6,438,551	+				+0.3
6,438,551	+				-0.6
6,438,552	-				+0.3
6,438,554	+				+0.3
6,438,554	+				+0.0
6,438,554	+				-1.3
6,438,555	-				-0.7
6,438,555	-				-0.3
6,438,555	-				-0.7
6,438,561	+				-0.0
6,438,561	+				-0.7
6,438,561	+				-0.7
6,438,561	+				-0.3
6,438,561	+				+0.3
6,438,561	+				+1.9
6,438,562	-				-1.3
6,438,571	-				-1.3
6,438,571	-				+0.3
6,438,578	-				-0.7
6,438,578	-				-1.0
6,438,578	-				-0.7
6,438,578	-				-2.6
6,438,580	+				-2.0
6,438,580	+				-2.0
6,438,580	+				+0.3
6,438,581	-				-2.3
6,438,605	+				+0.3
6,438,605	+				-1.3
6,438,605	+				-0.7
6,438,605	+				+0.3
6,438,605	+				-0.7
6,438,606	-				+0.1
6,438,608	+				+0.3
6,438,608	+				+0.3
6,438,608	+				+0.3
6,438,608	+				+0.3
6,438,608	+				+0.3
6,438,609	-				-0.7
6,438,611	+				-1.7
6,438,694	-		Pf6N2E2_5621	0.15	-0.2
6,438,710	+		Pf6N2E2_5621	0.17	+0.3
6,438,710	+		Pf6N2E2_5621	0.17	-1.7
6,438,923	-		Pf6N2E2_5621	0.48	+0.3
6,438,977	+		Pf6N2E2_5621	0.56	-0.9
6,438,978	-		Pf6N2E2_5621	0.56	-0.5
6,439,124	-		Pf6N2E2_5621	0.78	-0.7
6,439,253	-				-1.3
6,439,253	-				-1.7
6,439,259	-				-0.7
6,439,259	-				+0.3
6,439,306	+				-0.3
6,439,306	+				-0.8
6,439,306	+				+0.3
6,439,306	+				-0.1
6,439,306	+				-1.3
6,439,327	+		Pf6N2E2_5622	0.11	-1.3
6,439,327	+		Pf6N2E2_5622	0.11	+0.3
6,439,347	-		Pf6N2E2_5622	0.16	-0.7
6,439,665	-				-0.7
6,439,665	-				+0.3
6,439,717	+				+0.3
6,439,718	-				-1.4
6,439,718	-				+0.3
6,439,718	-				+0.3
6,439,800	-				-2.5
6,439,841	+		Pf6N2E2_5623	0.14	+0.3
6,439,841	+		Pf6N2E2_5623	0.14	-0.8
6,439,842	-		Pf6N2E2_5623	0.15	-1.8
6,439,987	+		Pf6N2E2_5623	0.63	-0.3
6,440,090	+				+0.3
6,440,090	+				-0.1
6,440,120	-				-0.7