Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5462

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
6,272,998	+		Pf6N2E2_5461	0.78	-2.0
6,272,999	-		Pf6N2E2_5461	0.78	-1.7
6,272,999	-		Pf6N2E2_5461	0.78	+0.3
6,273,056	-		Pf6N2E2_5461	0.82	-1.0
6,273,115	+		Pf6N2E2_5461	0.85	-1.3
6,273,116	-		Pf6N2E2_5461	0.85	-1.3
6,273,116	-		Pf6N2E2_5461	0.85	-1.3
6,273,231	+				+0.0
6,273,231	+				-0.5
6,273,232	-				+0.3
6,273,387	+				-1.0
6,273,388	-				-0.8
6,273,388	-				+0.3
6,273,388	-				-1.3
6,273,388	-				+0.3
6,273,388	-				+0.3
6,273,397	+				+0.3
6,273,398	-				+0.3
6,273,561	+				-0.5
6,273,561	+				-0.7
6,273,562	-				+0.3
6,273,562	-				-1.3
6,273,562	-				-0.1
6,273,562	-				-1.7
6,273,600	+				+0.3
6,273,601	-				+0.3
6,273,941	-		Pf6N2E2_5462	0.26	-2.2
6,273,941	-		Pf6N2E2_5462	0.26	-0.7
6,273,964	+		Pf6N2E2_5462	0.28	-0.7
6,273,965	-		Pf6N2E2_5462	0.28	-0.7
6,274,258	+		Pf6N2E2_5462	0.49	-1.3
6,274,259	-		Pf6N2E2_5462	0.49	-2.4
6,274,618	+		Pf6N2E2_5462	0.74	-0.7
6,274,618	+		Pf6N2E2_5462	0.74	-1.7
6,274,618	+		Pf6N2E2_5462	0.74	-1.3
6,274,739	-		Pf6N2E2_5462	0.83	+0.3
6,274,739	-		Pf6N2E2_5462	0.83	-1.7
6,274,935	-				-2.5
6,274,970	+				-1.3
6,274,970	+				+0.3
6,274,970	+				-1.7
6,274,970	+				+0.3
6,274,971	-				+0.3
6,274,971	-				-0.7
6,274,971	-				+0.3
6,274,971	-				+0.3
6,275,120	-				+0.3
6,275,171	-		Pf6N2E2_5463	0.11	-0.7
6,275,274	+		Pf6N2E2_5463	0.17	+0.3
6,275,274	+		Pf6N2E2_5463	0.17	-0.7
6,275,274	+		Pf6N2E2_5463	0.17	-1.7
6,275,275	-		Pf6N2E2_5463	0.17	+0.3
6,275,275	-		Pf6N2E2_5463	0.17	+0.3
6,275,275	-		Pf6N2E2_5463	0.17	-0.7
6,275,352	+		Pf6N2E2_5463	0.21	-0.7
6,275,369	-		Pf6N2E2_5463	0.22	-1.1
6,275,369	-		Pf6N2E2_5463	0.22	+0.3
6,275,466	+		Pf6N2E2_5463	0.27	-1.4
6,275,467	-		Pf6N2E2_5463	0.27	-0.3
6,275,467	-		Pf6N2E2_5463	0.27	+0.3
6,275,689	+		Pf6N2E2_5463	0.40	+0.3
6,275,924	+		Pf6N2E2_5463	0.53	-0.3
6,275,924	+		Pf6N2E2_5463	0.53	-0.7