Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4801

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
5,549,699	+		Pf6N2E2_4800	0.32	-4.2
5,549,699	+		Pf6N2E2_4800	0.32	+0.4
5,549,699	+		Pf6N2E2_4800	0.32	-3.9
5,549,699	+		Pf6N2E2_4800	0.32	-5.1
5,549,699	+		Pf6N2E2_4800	0.32	-6.3
5,549,700	-		Pf6N2E2_4800	0.32	-1.6
5,549,700	-		Pf6N2E2_4800	0.32	-1.2
5,549,700	-		Pf6N2E2_4800	0.32	-2.2
5,549,700	-		Pf6N2E2_4800	0.32	-4.5
5,549,700	-		Pf6N2E2_4800	0.32	+0.4
5,549,700	-		Pf6N2E2_4800	0.32	+0.4
5,549,715	+		Pf6N2E2_4800	0.34	-1.2
5,549,716	-		Pf6N2E2_4800	0.34	+0.4
5,549,716	-		Pf6N2E2_4800	0.34	-0.7
5,549,716	-		Pf6N2E2_4800	0.34	+0.4
5,549,736	+		Pf6N2E2_4800	0.35	+0.4
5,549,736	+		Pf6N2E2_4800	0.35	+0.4
5,549,737	-		Pf6N2E2_4800	0.35	+0.4
5,549,737	-		Pf6N2E2_4800	0.35	-2.4
5,549,737	-		Pf6N2E2_4800	0.35	-0.6
5,549,737	-		Pf6N2E2_4800	0.35	+0.4
5,549,859	+		Pf6N2E2_4800	0.45	+0.4
5,549,859	+		Pf6N2E2_4800	0.45	-0.6
5,549,859	+		Pf6N2E2_4800	0.45	-0.6
5,549,859	+		Pf6N2E2_4800	0.45	-3.2
5,549,859	+		Pf6N2E2_4800	0.45	-1.6
5,549,860	-		Pf6N2E2_4800	0.45	+0.4
5,549,860	-		Pf6N2E2_4800	0.45	+0.4
5,550,002	+		Pf6N2E2_4800	0.56	-2.9
5,550,002	+		Pf6N2E2_4800	0.56	+0.4
5,550,146	-		Pf6N2E2_4800	0.67	+0.4
5,550,146	-		Pf6N2E2_4800	0.67	+0.4
5,550,335	+		Pf6N2E2_4800	0.82	-1.9
5,550,335	+		Pf6N2E2_4800	0.82	+0.4
5,550,335	+		Pf6N2E2_4800	0.82	-8.8
5,550,336	-		Pf6N2E2_4800	0.82	+0.4
5,550,336	-		Pf6N2E2_4800	0.82	+0.4
5,550,336	-		Pf6N2E2_4800	0.82	-1.2
5,550,336	-		Pf6N2E2_4800	0.82	+0.4
5,550,400	+		Pf6N2E2_4800	0.87	-1.2
5,550,532	+				+0.4
5,550,532	+				-0.6
5,550,552	+				-2.4
5,550,552	+				+0.4
5,550,552	+				-0.6
5,550,552	+				-0.6
5,550,552	+				-0.6
5,550,552	+				-3.8
5,550,552	+				+0.4
5,550,552	+				-0.6
5,550,553	-				+0.4
5,550,553	-				+0.4
5,550,553	-				+0.4
5,550,559	+				-3.9
5,550,559	+				-5.8
5,550,559	+				-3.6
5,550,560	-				-1.9
5,550,587	+				+0.4
5,550,587	+				+0.4
5,550,588	-				-0.6
5,550,652	+				-2.9
5,550,652	+				-0.6
5,550,653	-				-1.2
5,550,656	+				+0.4
5,550,656	+				+0.4
5,550,656	+				-2.6
5,550,657	-				-4.0
5,550,657	-				-3.0
5,550,674	+				-4.0
5,550,674	+				+0.4
5,550,674	+				-4.6
5,550,699	-				+0.4
5,550,719	-				+0.4
5,550,719	-				-2.6
5,550,719	-				+0.4
5,550,732	+				-1.2
5,550,733	-				-3.2
5,550,734	+				-6.3
5,550,735	-				-0.6
5,550,879	-		Pf6N2E2_4801	0.11	-0.6
5,550,879	-		Pf6N2E2_4801	0.11	-0.6
5,550,928	+		Pf6N2E2_4801	0.13	+0.4
5,550,928	+		Pf6N2E2_4801	0.13	-0.6
5,551,082	+		Pf6N2E2_4801	0.21	-1.6
5,551,082	+		Pf6N2E2_4801	0.21	-3.6
5,551,082	+		Pf6N2E2_4801	0.21	+0.4
5,551,092	-		Pf6N2E2_4801	0.22	-0.6
5,551,092	-		Pf6N2E2_4801	0.22	+0.4
5,551,124	+		Pf6N2E2_4801	0.23	+0.4
5,551,124	+		Pf6N2E2_4801	0.23	-5.3
5,551,125	-		Pf6N2E2_4801	0.24	-1.2
5,551,125	-		Pf6N2E2_4801	0.24	+0.4
5,551,125	-		Pf6N2E2_4801	0.24	-4.0
5,551,173	-		Pf6N2E2_4801	0.26	-0.6
5,551,187	+		Pf6N2E2_4801	0.27	+0.4
5,551,187	+		Pf6N2E2_4801	0.27	+0.4
5,551,187	+		Pf6N2E2_4801	0.27	+0.4
5,551,265	+		Pf6N2E2_4801	0.31	-0.6
5,551,265	+		Pf6N2E2_4801	0.31	-0.6
5,551,265	+		Pf6N2E2_4801	0.31	-4.5
5,551,265	+		Pf6N2E2_4801	0.31	-0.6
5,551,265	+		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	-3.2
5,551,266	-		Pf6N2E2_4801	0.31	-0.6
5,551,266	-		Pf6N2E2_4801	0.31	-0.6
5,551,266	-		Pf6N2E2_4801	0.31	-3.2
5,551,266	-		Pf6N2E2_4801	0.31	-5.9
5,551,266	-		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	-5.0
5,551,266	-		Pf6N2E2_4801	0.31	+0.4
5,551,266	-		Pf6N2E2_4801	0.31	-0.6
5,551,445	+		Pf6N2E2_4801	0.40	+0.4
5,551,445	+		Pf6N2E2_4801	0.40	-2.4
5,551,446	-		Pf6N2E2_4801	0.40	-0.6
5,551,446	-		Pf6N2E2_4801	0.40	-4.4
5,551,463	+		Pf6N2E2_4801	0.41	-0.6
5,551,463	+		Pf6N2E2_4801	0.41	-1.6
5,551,463	+		Pf6N2E2_4801	0.41	-1.2
5,551,463	+		Pf6N2E2_4801	0.41	+0.4
5,551,464	-		Pf6N2E2_4801	0.41	-1.6
5,551,464	-		Pf6N2E2_4801	0.41	+0.4
5,551,464	-		Pf6N2E2_4801	0.41	+0.4
5,551,583	+		Pf6N2E2_4801	0.47	-0.6
5,551,584	-		Pf6N2E2_4801	0.47	-2.9
5,551,617	-		Pf6N2E2_4801	0.49	-0.6
5,551,634	+		Pf6N2E2_4801	0.50	-1.2
5,551,634	+		Pf6N2E2_4801	0.50	-1.9
5,551,634	+		Pf6N2E2_4801	0.50	-1.2
5,551,634	+		Pf6N2E2_4801	0.50	-5.0
5,551,635	-		Pf6N2E2_4801	0.50	+0.4
5,551,635	-		Pf6N2E2_4801	0.50	-2.9
5,551,635	-		Pf6N2E2_4801	0.50	-0.6
5,551,635	-		Pf6N2E2_4801	0.50	-6.5
5,551,635	-		Pf6N2E2_4801	0.50	-0.6
5,551,635	-		Pf6N2E2_4801	0.50	-0.6
5,551,635	-		Pf6N2E2_4801	0.50	-3.2
5,551,680	+		Pf6N2E2_4801	0.52	-2.6
5,551,680	+		Pf6N2E2_4801	0.52	+0.4
5,551,680	+		Pf6N2E2_4801	0.52	-8.1
5,551,680	+		Pf6N2E2_4801	0.52	+0.4
5,551,680	+		Pf6N2E2_4801	0.52	-1.6
5,551,680	+		Pf6N2E2_4801	0.52	+0.4
5,551,680	+		Pf6N2E2_4801	0.52	-0.6
5,551,680	+		Pf6N2E2_4801	0.52	-3.5
5,551,681	-		Pf6N2E2_4801	0.52	+0.4
5,551,757	+		Pf6N2E2_4801	0.56	-0.6
5,551,757	+		Pf6N2E2_4801	0.56	-0.6
5,551,757	+		Pf6N2E2_4801	0.56	-1.2
5,551,757	+		Pf6N2E2_4801	0.56	-1.2
5,551,757	+		Pf6N2E2_4801	0.56	-3.1
5,551,757	+		Pf6N2E2_4801	0.56	+0.4
5,551,757	+		Pf6N2E2_4801	0.56	+0.4
5,551,758	-		Pf6N2E2_4801	0.56	-0.6
5,551,758	-		Pf6N2E2_4801	0.56	-0.6
5,551,758	-		Pf6N2E2_4801	0.56	-3.5
5,551,758	-		Pf6N2E2_4801	0.56	-1.2
5,551,868	+		Pf6N2E2_4801	0.62	-0.6
5,551,868	+		Pf6N2E2_4801	0.62	-1.6
5,551,868	+		Pf6N2E2_4801	0.62	+0.4
5,551,868	+		Pf6N2E2_4801	0.62	+0.4
5,551,868	+		Pf6N2E2_4801	0.62	-0.6
5,551,868	+		Pf6N2E2_4801	0.62	-2.2
5,551,869	-		Pf6N2E2_4801	0.62	-0.6
5,551,869	-		Pf6N2E2_4801	0.62	+0.4
5,551,869	-		Pf6N2E2_4801	0.62	+0.4
5,551,869	-		Pf6N2E2_4801	0.62	+0.4
5,551,944	+		Pf6N2E2_4801	0.66	-1.9
5,551,944	+		Pf6N2E2_4801	0.66	-7.2
5,552,010	-		Pf6N2E2_4801	0.70	-0.6
5,552,088	+		Pf6N2E2_4801	0.74	+0.4
5,552,088	+		Pf6N2E2_4801	0.74	-1.6
5,552,089	-		Pf6N2E2_4801	0.74	+0.4
5,552,161	+		Pf6N2E2_4801	0.77	+0.4
5,552,198	+		Pf6N2E2_4801	0.79	+0.4
5,552,198	+		Pf6N2E2_4801	0.79	-0.6
5,552,198	+		Pf6N2E2_4801	0.79	-0.6
5,552,199	-		Pf6N2E2_4801	0.79	-1.2
5,552,199	-		Pf6N2E2_4801	0.79	+0.4
5,552,250	+		Pf6N2E2_4801	0.82	-1.2
5,552,250	+		Pf6N2E2_4801	0.82	+0.4
5,552,250	+		Pf6N2E2_4801	0.82	-5.5
5,552,251	-		Pf6N2E2_4801	0.82	+0.4
5,552,251	-		Pf6N2E2_4801	0.82	+0.4
5,552,276	+		Pf6N2E2_4801	0.83	-0.6
5,552,276	+		Pf6N2E2_4801	0.83	-1.2
5,552,277	-		Pf6N2E2_4801	0.83	+0.4
5,552,277	-		Pf6N2E2_4801	0.83	-0.6
5,552,277	-		Pf6N2E2_4801	0.83	+0.4
5,552,277	-		Pf6N2E2_4801	0.83	-6.3
5,552,277	-		Pf6N2E2_4801	0.83	-6.5
5,552,324	+		Pf6N2E2_4801	0.86	-6.4
5,552,324	+		Pf6N2E2_4801	0.86	-2.9
5,552,324	+		Pf6N2E2_4801	0.86	-1.2
5,552,324	+		Pf6N2E2_4801	0.86	+0.4
5,552,492	+				-1.2
5,552,492	+				-1.9
5,552,492	+				+0.4
5,552,493	-				-3.6
5,552,493	-				+0.4
5,552,493	-				-3.3
5,552,526	-				-0.6
5,552,540	+				-1.9
5,552,540	+				-0.6
5,552,541	-				-1.2
5,552,614	-				-0.6
5,552,679	+				+0.4
5,552,782	-				-0.6
5,552,787	+				+0.4
5,552,806	+				-1.2
5,552,807	-				-0.6
5,552,807	-				-0.6
5,552,817	+				-6.5
5,552,817	+				-1.2
5,552,817	+				-2.4
5,552,817	+				-0.6
5,552,817	+				-0.6
5,552,817	+				-0.6
5,552,817	+				+0.4
5,552,818	-				+0.4
5,552,821	+				-0.6
5,552,821	+				-2.6
5,552,821	+				-2.6
5,552,821	+				-3.4
5,552,821	+				-1.9
5,552,822	-				+0.4
5,552,822	-				-2.0
5,552,822	-				-1.5
5,552,822	-				-0.6
5,552,825	+				-0.6
5,552,825	+				-2.8
5,552,825	+				-0.6
5,552,825	+				+0.4
5,552,826	-				+0.4
5,552,826	-				+0.4
5,552,826	-				-0.6
5,552,826	-				+0.4
5,552,826	-				-0.6
5,552,826	-				+0.4
5,552,826	-				+0.4
5,552,826	-				-1.2
5,552,829	+				+0.4
5,552,829	+				+0.4
5,552,829	+				-3.2
5,552,890	-				-1.7
5,552,930	+		Pf6N2E2_4802	0.10	-0.6
5,552,930	+		Pf6N2E2_4802	0.10	-2.9
5,552,931	-		Pf6N2E2_4802	0.11	+0.4
5,552,969	+		Pf6N2E2_4802	0.22	-1.6
5,552,969	+		Pf6N2E2_4802	0.22	-0.6
5,552,969	+		Pf6N2E2_4802	0.22	+0.4
5,552,969	+		Pf6N2E2_4802	0.22	-0.6
5,552,999	+		Pf6N2E2_4802	0.31	-1.2
5,553,000	-		Pf6N2E2_4802	0.32	-1.0
5,553,000	-		Pf6N2E2_4802	0.32	-1.2
5,553,032	+		Pf6N2E2_4802	0.41	+0.4
5,553,032	+		Pf6N2E2_4802	0.41	+0.4
5,553,033	-		Pf6N2E2_4802	0.42	-0.5
5,553,049	-		Pf6N2E2_4802	0.46	+0.4
5,553,049	-		Pf6N2E2_4802	0.46	-0.6
5,553,239	-				-0.6
5,553,239	-				-0.6
5,553,239	-				-0.6
5,553,239	-				+0.4
5,553,339	+				-1.6
5,553,339	+				+0.4
5,553,339	+				-1.6
5,553,339	+				+0.4
5,553,339	+				-1.2
5,553,339	+				-0.6
5,553,339	+				-0.6
5,553,339	+				-3.4
5,553,339	+				-2.5
5,553,339	+				+0.4
5,553,339	+				-0.6
5,553,339	+				-0.6
5,553,339	+				-1.9
5,553,339	+				+0.4
5,553,340	-				-0.6
5,553,340	-				+0.4
5,553,340	-				+0.4
5,553,340	-				+0.4
5,553,340	-				+0.4
5,553,340	-				-1.3
5,553,340	-				-1.1
5,553,595	+		Pf6N2E2_4803	0.38	-1.0