Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4750 and Pf6N2E2_4751 are separated by 252 nucleotides Pf6N2E2_4751 and Pf6N2E2_4752 are separated by 228 nucleotides Pf6N2E2_4752 and Pf6N2E2_4753 are separated by 512 nucleotides
Pf6N2E2_4750 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 5,485,968 to 5,487,908
_4750
Pf6N2E2_4751 - response regulator, at 5,488,161 to 5,488,607
_4751
Pf6N2E2_4752 - Malate synthase G (EC 2.3.3.9), at 5,488,836 to 5,491,013
_4752
Pf6N2E2_4753 - Glycine cleavage system transcriptional antiactivator GcvR, at 5,491,526 to 5,492,044
_4753
Position (kb) 5488
5489
5490
5491
5492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5487.903 kb on - strand at 5487.909 kb on + strand at 5487.909 kb on + strand at 5487.910 kb on - strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.987 kb on + strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.988 kb on - strand at 5487.993 kb on + strand at 5487.994 kb on - strand at 5488.006 kb on - strand at 5488.017 kb on + strand at 5488.018 kb on - strand at 5488.018 kb on - strand at 5488.030 kb on + strand at 5488.057 kb on + strand at 5488.057 kb on + strand at 5488.057 kb on + strand at 5488.057 kb on + strand at 5488.058 kb on - strand at 5488.058 kb on - strand at 5488.058 kb on - strand at 5488.058 kb on - strand at 5488.058 kb on - strand at 5488.141 kb on + strand at 5488.142 kb on - strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.150 kb on + strand at 5488.151 kb on - strand at 5488.151 kb on - strand at 5488.175 kb on + strand at 5488.175 kb on + strand at 5488.175 kb on + strand at 5488.176 kb on - strand at 5488.427 kb on + strand, within Pf6N2E2_4751 at 5488.427 kb on + strand, within Pf6N2E2_4751 at 5488.428 kb on - strand, within Pf6N2E2_4751 at 5488.428 kb on - strand, within Pf6N2E2_4751 at 5488.477 kb on + strand, within Pf6N2E2_4751 at 5488.605 kb on + strand at 5488.605 kb on + strand at 5488.695 kb on + strand at 5488.695 kb on + strand at 5488.696 kb on - strand at 5488.772 kb on + strand at 5488.772 kb on + strand at 5488.772 kb on + strand at 5488.772 kb on + strand at 5488.772 kb on + strand at 5488.772 kb on + strand at 5488.773 kb on - strand at 5488.773 kb on - strand at 5488.894 kb on + strand at 5488.895 kb on - strand at 5488.984 kb on + strand at 5488.985 kb on - strand at 5488.985 kb on - strand at 5489.105 kb on + strand, within Pf6N2E2_4752 at 5489.105 kb on + strand, within Pf6N2E2_4752 at 5489.105 kb on + strand, within Pf6N2E2_4752 at 5489.105 kb on + strand, within Pf6N2E2_4752 at 5489.105 kb on + strand, within Pf6N2E2_4752 at 5489.106 kb on - strand, within Pf6N2E2_4752 at 5489.197 kb on + strand, within Pf6N2E2_4752 at 5489.197 kb on + strand, within Pf6N2E2_4752 at 5489.197 kb on + strand, within Pf6N2E2_4752 at 5489.197 kb on + strand, within Pf6N2E2_4752 at 5489.356 kb on + strand, within Pf6N2E2_4752 at 5489.545 kb on + strand, within Pf6N2E2_4752 at 5489.546 kb on - strand, within Pf6N2E2_4752 at 5489.546 kb on - strand, within Pf6N2E2_4752 at 5489.744 kb on + strand, within Pf6N2E2_4752 at 5489.763 kb on + strand, within Pf6N2E2_4752 at 5489.763 kb on + strand, within Pf6N2E2_4752 at 5489.763 kb on + strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.764 kb on - strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.839 kb on + strand, within Pf6N2E2_4752 at 5489.840 kb on - strand, within Pf6N2E2_4752 at 5489.927 kb on + strand, within Pf6N2E2_4752 at 5489.927 kb on + strand, within Pf6N2E2_4752 at 5489.928 kb on - strand, within Pf6N2E2_4752 at 5489.928 kb on - strand, within Pf6N2E2_4752 at 5489.928 kb on - strand, within Pf6N2E2_4752 at 5489.928 kb on - strand, within Pf6N2E2_4752 at 5490.052 kb on + strand, within Pf6N2E2_4752 at 5490.052 kb on + strand, within Pf6N2E2_4752 at 5490.149 kb on - strand, within Pf6N2E2_4752 at 5490.149 kb on - strand, within Pf6N2E2_4752 at 5490.436 kb on + strand, within Pf6N2E2_4752 at 5490.437 kb on - strand, within Pf6N2E2_4752 at 5490.586 kb on + strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.598 kb on + strand, within Pf6N2E2_4752 at 5490.599 kb on - strand, within Pf6N2E2_4752 at 5490.599 kb on - strand, within Pf6N2E2_4752 at 5490.713 kb on + strand, within Pf6N2E2_4752 at 5490.714 kb on - strand, within Pf6N2E2_4752 at 5490.745 kb on + strand, within Pf6N2E2_4752 at 5490.746 kb on - strand, within Pf6N2E2_4752 at 5490.746 kb on - strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.773 kb on - strand, within Pf6N2E2_4752 at 5490.856 kb on - strand at 5491.036 kb on + strand at 5491.036 kb on + strand at 5491.036 kb on + strand at 5491.037 kb on - strand at 5491.085 kb on + strand at 5491.085 kb on + strand at 5491.085 kb on + strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.135 kb on + strand at 5491.135 kb on + strand at 5491.135 kb on + strand at 5491.136 kb on - strand at 5491.178 kb on - strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.203 kb on + strand at 5491.203 kb on + strand at 5491.203 kb on + strand at 5491.204 kb on - strand at 5491.204 kb on - strand at 5491.220 kb on + strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.256 kb on - strand at 5491.256 kb on - strand at 5491.280 kb on - strand at 5491.287 kb on + strand at 5491.288 kb on - strand at 5491.423 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.494 kb on + strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.730 kb on + strand, within Pf6N2E2_4753 at 5491.730 kb on + strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.827 kb on + strand, within Pf6N2E2_4753 at 5491.828 kb on - strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 5,487,903 - -0.6 5,487,909 + -0.6 5,487,909 + -0.6 5,487,910 - +0.4 5,487,987 + -1.2 5,487,987 + +0.0 5,487,987 + -1.2 5,487,987 + +0.2 5,487,987 + +0.4 5,487,987 + -1.2 5,487,987 + -0.6 5,487,987 + -0.2 5,487,987 + +0.4 5,487,987 + +0.4 5,487,987 + -0.6 5,487,987 + +0.4 5,487,987 + +0.4 5,487,987 + +0.4 5,487,988 - +0.4 5,487,988 - +0.4 5,487,988 - +0.1 5,487,988 - -2.2 5,487,988 - -0.6 5,487,988 - -0.6 5,487,988 - -1.6 5,487,988 - +0.4 5,487,988 - -1.1 5,487,993 + +0.4 5,487,994 - +0.4 5,488,006 - -0.6 5,488,017 + +1.4 5,488,018 - -0.8 5,488,018 - -0.6 5,488,030 + +0.4 5,488,057 + +0.9 5,488,057 + -1.2 5,488,057 + -1.9 5,488,057 + -1.2 5,488,058 - -1.2 5,488,058 - -1.2 5,488,058 - -1.6 5,488,058 - +0.4 5,488,058 - -0.3 5,488,141 + +0.4 5,488,142 - -0.6 5,488,150 + +0.4 5,488,150 + +0.4 5,488,150 + +0.4 5,488,150 + +0.4 5,488,150 + -1.2 5,488,150 + +0.4 5,488,150 + -1.2 5,488,150 + +0.4 5,488,151 - -0.9 5,488,151 - -0.6 5,488,175 + +0.4 5,488,175 + -0.6 5,488,175 + +0.4 5,488,176 - -0.6 5,488,427 + Pf6N2E2_4751 0.60 -2.0 5,488,427 + Pf6N2E2_4751 0.60 +0.4 5,488,428 - Pf6N2E2_4751 0.60 +0.4 5,488,428 - Pf6N2E2_4751 0.60 -0.6 5,488,477 + Pf6N2E2_4751 0.71 -0.9 5,488,605 + +0.4 5,488,605 + -1.2 5,488,695 + -0.8 5,488,695 + -0.3 5,488,696 - -0.6 5,488,772 + -1.3 5,488,772 + -1.6 5,488,772 + -0.2 5,488,772 + -0.6 5,488,772 + -0.6 5,488,772 + +0.4 5,488,773 - -1.2 5,488,773 - +0.4 5,488,894 + +0.4 5,488,895 - -0.6 5,488,984 + -2.4 5,488,985 - -0.6 5,488,985 - -0.6 5,489,105 + Pf6N2E2_4752 0.12 +0.4 5,489,105 + Pf6N2E2_4752 0.12 +0.4 5,489,105 + Pf6N2E2_4752 0.12 +0.4 5,489,105 + Pf6N2E2_4752 0.12 +0.4 5,489,105 + Pf6N2E2_4752 0.12 -1.5 5,489,106 - Pf6N2E2_4752 0.12 -0.6 5,489,197 + Pf6N2E2_4752 0.17 -2.0 5,489,197 + Pf6N2E2_4752 0.17 -1.8 5,489,197 + Pf6N2E2_4752 0.17 +0.4 5,489,197 + Pf6N2E2_4752 0.17 +0.4 5,489,356 + Pf6N2E2_4752 0.24 -1.2 5,489,545 + Pf6N2E2_4752 0.33 -0.6 5,489,546 - Pf6N2E2_4752 0.33 -2.0 5,489,546 - Pf6N2E2_4752 0.33 +0.4 5,489,744 + Pf6N2E2_4752 0.42 +0.4 5,489,763 + Pf6N2E2_4752 0.43 +0.4 5,489,763 + Pf6N2E2_4752 0.43 -0.6 5,489,763 + Pf6N2E2_4752 0.43 -0.6 5,489,764 - Pf6N2E2_4752 0.43 -2.8 5,489,764 - Pf6N2E2_4752 0.43 +0.4 5,489,764 - Pf6N2E2_4752 0.43 +0.4 5,489,764 - Pf6N2E2_4752 0.43 -0.6 5,489,764 - Pf6N2E2_4752 0.43 -0.6 5,489,764 - Pf6N2E2_4752 0.43 -2.6 5,489,839 + Pf6N2E2_4752 0.46 -2.8 5,489,839 + Pf6N2E2_4752 0.46 -3.3 5,489,839 + Pf6N2E2_4752 0.46 -1.6 5,489,839 + Pf6N2E2_4752 0.46 -0.6 5,489,839 + Pf6N2E2_4752 0.46 -0.6 5,489,839 + Pf6N2E2_4752 0.46 -2.2 5,489,840 - Pf6N2E2_4752 0.46 -1.0 5,489,927 + Pf6N2E2_4752 0.50 -1.8 5,489,927 + Pf6N2E2_4752 0.50 -0.6 5,489,928 - Pf6N2E2_4752 0.50 -1.2 5,489,928 - Pf6N2E2_4752 0.50 -2.8 5,489,928 - Pf6N2E2_4752 0.50 -0.6 5,489,928 - Pf6N2E2_4752 0.50 -2.0 5,490,052 + Pf6N2E2_4752 0.56 -3.2 5,490,052 + Pf6N2E2_4752 0.56 +0.4 5,490,149 - Pf6N2E2_4752 0.60 -1.4 5,490,149 - Pf6N2E2_4752 0.60 -0.6 5,490,436 + Pf6N2E2_4752 0.73 -1.2 5,490,437 - Pf6N2E2_4752 0.74 -1.2 5,490,586 + Pf6N2E2_4752 0.80 -0.6 5,490,587 - Pf6N2E2_4752 0.80 -2.3 5,490,587 - Pf6N2E2_4752 0.80 -1.6 5,490,587 - Pf6N2E2_4752 0.80 -0.6 5,490,598 + Pf6N2E2_4752 0.81 -1.2 5,490,599 - Pf6N2E2_4752 0.81 -0.2 5,490,599 - Pf6N2E2_4752 0.81 +0.4 5,490,713 + Pf6N2E2_4752 0.86 -1.6 5,490,714 - Pf6N2E2_4752 0.86 -0.6 5,490,745 + Pf6N2E2_4752 0.88 -1.9 5,490,746 - Pf6N2E2_4752 0.88 -0.6 5,490,746 - Pf6N2E2_4752 0.88 -0.6 5,490,772 + Pf6N2E2_4752 0.89 -3.3 5,490,772 + Pf6N2E2_4752 0.89 +0.4 5,490,772 + Pf6N2E2_4752 0.89 -2.6 5,490,773 - Pf6N2E2_4752 0.89 +0.4 5,490,856 - +0.4 5,491,036 + +0.4 5,491,036 + +0.4 5,491,036 + -0.6 5,491,037 - -1.2 5,491,085 + -1.2 5,491,085 + -0.6 5,491,085 + -0.6 5,491,086 - +0.4 5,491,086 - -1.0 5,491,086 - -1.0 5,491,086 - +0.4 5,491,086 - +0.4 5,491,086 - -1.9 5,491,109 - +0.4 5,491,109 - -1.2 5,491,109 - -1.9 5,491,109 - +0.4 5,491,135 + +0.4 5,491,135 + +0.4 5,491,135 + +0.4 5,491,136 - +0.4 5,491,178 - -1.2 5,491,191 + -0.6 5,491,191 + -0.6 5,491,191 + -0.8 5,491,191 + +0.4 5,491,192 - -0.6 5,491,192 - -0.2 5,491,192 - -0.6 5,491,192 - +0.4 5,491,199 + +0.4 5,491,199 + -0.6 5,491,199 + -0.6 5,491,199 + -0.6 5,491,199 + -0.4 5,491,200 - -1.2 5,491,200 - -1.9 5,491,200 - +0.4 5,491,200 - -0.6 5,491,200 - +0.4 5,491,200 - -1.2 5,491,200 - -0.6 5,491,200 - -0.6 5,491,200 - -1.2 5,491,200 - -1.2 5,491,200 - +0.4 5,491,203 + -1.2 5,491,203 + +0.4 5,491,203 + +0.4 5,491,204 - -1.2 5,491,204 - +0.4 5,491,220 + -1.2 5,491,221 - -0.6 5,491,221 - -0.6 5,491,221 - +0.4 5,491,221 - -0.4 5,491,223 + +0.4 5,491,223 + +0.4 5,491,223 + +0.4 5,491,223 + -0.6 5,491,223 + -0.6 5,491,223 + -2.0 5,491,223 + +0.4 5,491,223 + +0.4 5,491,223 + -0.6 5,491,223 + -1.2 5,491,224 - -1.3 5,491,224 - +0.4 5,491,224 - -1.2 5,491,224 - -0.3 5,491,224 - +0.4 5,491,224 - -0.6 5,491,224 - -0.1 5,491,224 - -1.0 5,491,224 - +0.4 5,491,224 - -0.8 5,491,224 - -0.6 5,491,255 + +0.4 5,491,255 + +0.4 5,491,255 + -0.6 5,491,255 + -1.0 5,491,255 + -0.2 5,491,255 + -1.9 5,491,256 - -0.6 5,491,256 - +0.4 5,491,280 - -2.1 5,491,287 + +0.4 5,491,288 - -0.1 5,491,423 + +0.4 5,491,492 + -0.2 5,491,492 + -1.2 5,491,492 + +0.4 5,491,492 + -0.6 5,491,492 + +0.4 5,491,492 + +0.4 5,491,492 + +0.4 5,491,493 - +0.4 5,491,493 - -0.6 5,491,493 - +0.4 5,491,493 - +0.4 5,491,493 - +0.4 5,491,493 - -0.6 5,491,493 - -1.2 5,491,493 - -0.6 5,491,494 + +0.4 5,491,495 - -0.6 5,491,495 - +0.4 5,491,495 - -0.6 5,491,495 - -0.5 5,491,495 - +2.0 5,491,495 - +0.4 5,491,495 - +0.4 5,491,495 - -0.6 5,491,730 + Pf6N2E2_4753 0.39 -0.2 5,491,730 + Pf6N2E2_4753 0.39 -0.6 5,491,731 - Pf6N2E2_4753 0.39 -0.6 5,491,731 - Pf6N2E2_4753 0.39 -0.5 5,491,731 - Pf6N2E2_4753 0.39 -0.7 5,491,731 - Pf6N2E2_4753 0.39 +0.4 5,491,827 + Pf6N2E2_4753 0.58 +0.4 5,491,828 - Pf6N2E2_4753 0.58 -0.4 5,491,889 + Pf6N2E2_4753 0.70 +0.4 5,491,889 + Pf6N2E2_4753 0.70 +0.4 5,491,889 + Pf6N2E2_4753 0.70 -0.0 5,491,889 + Pf6N2E2_4753 0.70 +0.4 5,491,889 + Pf6N2E2_4753 0.70 -0.6 5,491,889 + Pf6N2E2_4753 0.70 -0.6 5,491,890 - Pf6N2E2_4753 0.70 -1.9 5,491,890 - Pf6N2E2_4753 0.70 -0.4 5,491,890 - Pf6N2E2_4753 0.70 +0.4 5,491,890 - Pf6N2E2_4753 0.70 -0.2 5,491,890 - Pf6N2E2_4753 0.70 +0.4
Or see this region's nucleotide sequence