Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4679 and Pf6N2E2_4680 are separated by 80 nucleotides Pf6N2E2_4680 and Pf6N2E2_4681 are separated by 512 nucleotides
Pf6N2E2_4679 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 5,412,213 to 5,413,685
_4679
Pf6N2E2_4680 - HTH-type transcriptional regulator BetI, at 5,413,766 to 5,414,386
_4680
Pf6N2E2_4681 - ABC transporter for Carnitine, ATPase component <small>(from data)</small>, at 5,414,899 to 5,416,077
_4681
Position (kb) 5413
5414
5415 Strain fitness (log2 ratio) -2
-1
0
1 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679 at 5413.111 kb on + strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.112 kb on - strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.251 kb on + strand, within Pf6N2E2_4679 at 5413.276 kb on + strand, within Pf6N2E2_4679 at 5413.276 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.339 kb on + strand, within Pf6N2E2_4679 at 5413.340 kb on - strand, within Pf6N2E2_4679 at 5413.340 kb on - strand, within Pf6N2E2_4679 at 5413.342 kb on + strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.343 kb on - strand, within Pf6N2E2_4679 at 5413.393 kb on + strand, within Pf6N2E2_4679 at 5413.642 kb on + strand at 5413.642 kb on + strand at 5413.657 kb on + strand at 5413.658 kb on - strand at 5413.658 kb on - strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.704 kb on + strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.705 kb on - strand at 5413.737 kb on + strand at 5413.737 kb on + strand at 5413.738 kb on - strand at 5413.739 kb on + strand at 5413.740 kb on - strand at 5413.827 kb on + strand at 5413.827 kb on + strand at 5413.827 kb on + strand at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.828 kb on - strand, within Pf6N2E2_4680 at 5413.834 kb on - strand, within Pf6N2E2_4680 at 5413.986 kb on + strand, within Pf6N2E2_4680 at 5413.987 kb on - strand, within Pf6N2E2_4680 at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.401 kb on + strand at 5414.402 kb on - strand at 5414.448 kb on + strand at 5414.449 kb on - strand at 5414.491 kb on + strand at 5414.491 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.530 kb on - strand at 5414.530 kb on - strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.623 kb on - strand at 5414.636 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.665 kb on + strand at 5414.665 kb on + strand at 5414.666 kb on - strand at 5414.788 kb on + strand at 5414.788 kb on + strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.811 kb on - strand at 5414.818 kb on - strand at 5414.818 kb on - strand at 5414.824 kb on + strand at 5414.824 kb on + strand at 5414.825 kb on - strand at 5414.825 kb on - strand at 5414.900 kb on + strand at 5414.901 kb on - strand at 5414.930 kb on + strand at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.332 kb on + strand, within Pf6N2E2_4681 at 5415.333 kb on - strand, within Pf6N2E2_4681
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 5,412,847 + Pf6N2E2_4679 0.43 -0.6 5,412,847 + Pf6N2E2_4679 0.43 -0.7 5,412,847 + Pf6N2E2_4679 0.43 +0.4 5,412,848 - Pf6N2E2_4679 0.43 -0.6 5,412,848 - Pf6N2E2_4679 0.43 +0.4 5,413,111 + Pf6N2E2_4679 0.61 +0.4 5,413,112 - Pf6N2E2_4679 0.61 -0.9 5,413,112 - Pf6N2E2_4679 0.61 -1.1 5,413,112 - Pf6N2E2_4679 0.61 +0.4 5,413,251 + Pf6N2E2_4679 0.70 +0.4 5,413,251 + Pf6N2E2_4679 0.70 -1.1 5,413,251 + Pf6N2E2_4679 0.70 -0.8 5,413,276 + Pf6N2E2_4679 0.72 -1.1 5,413,276 + Pf6N2E2_4679 0.72 +0.4 5,413,339 + Pf6N2E2_4679 0.76 +0.4 5,413,339 + Pf6N2E2_4679 0.76 -0.6 5,413,339 + Pf6N2E2_4679 0.76 +0.4 5,413,340 - Pf6N2E2_4679 0.77 -0.6 5,413,340 - Pf6N2E2_4679 0.77 +0.4 5,413,342 + Pf6N2E2_4679 0.77 +0.4 5,413,343 - Pf6N2E2_4679 0.77 +0.4 5,413,343 - Pf6N2E2_4679 0.77 -1.6 5,413,343 - Pf6N2E2_4679 0.77 +0.4 5,413,343 - Pf6N2E2_4679 0.77 -0.6 5,413,343 - Pf6N2E2_4679 0.77 -1.1 5,413,393 + Pf6N2E2_4679 0.80 +0.4 5,413,642 + -0.3 5,413,642 + -1.1 5,413,657 + +0.4 5,413,658 - +0.4 5,413,658 - +0.0 5,413,704 + -0.6 5,413,704 + +0.4 5,413,704 + -0.6 5,413,704 + -1.9 5,413,704 + +0.4 5,413,704 + -1.6 5,413,704 + +0.4 5,413,705 - -0.6 5,413,705 - -0.5 5,413,705 - -0.6 5,413,705 - -0.6 5,413,705 - -0.6 5,413,705 - +0.4 5,413,705 - -0.6 5,413,737 + -1.1 5,413,737 + -0.6 5,413,738 - -1.1 5,413,739 + -1.9 5,413,740 - +0.4 5,413,827 + -0.6 5,413,827 + -0.0 5,413,827 + -0.6 5,413,828 - Pf6N2E2_4680 0.10 -0.6 5,413,828 - Pf6N2E2_4680 0.10 -0.6 5,413,828 - Pf6N2E2_4680 0.10 +0.4 5,413,834 - Pf6N2E2_4680 0.11 -1.1 5,413,986 + Pf6N2E2_4680 0.35 -1.8 5,413,987 - Pf6N2E2_4680 0.36 -1.1 5,414,388 + +0.4 5,414,388 + +0.4 5,414,388 + +0.4 5,414,388 + +0.4 5,414,388 + -0.6 5,414,388 + -1.9 5,414,388 + -0.6 5,414,389 - -1.1 5,414,389 - +0.4 5,414,389 - -0.6 5,414,389 - +0.2 5,414,389 - +0.4 5,414,389 - +0.4 5,414,389 - +0.4 5,414,389 - -1.1 5,414,389 - -1.9 5,414,389 - -0.6 5,414,389 - +0.4 5,414,401 + +0.4 5,414,402 - +0.4 5,414,448 + -0.6 5,414,449 - +0.2 5,414,491 + +0.4 5,414,491 + -1.1 5,414,529 + +0.3 5,414,529 + +0.4 5,414,529 + -0.6 5,414,530 - +0.4 5,414,530 - +0.4 5,414,594 + -0.6 5,414,594 + +0.4 5,414,594 + -0.6 5,414,595 - -1.1 5,414,595 - +0.4 5,414,595 - -0.6 5,414,595 - -0.3 5,414,595 - -1.1 5,414,596 + -1.1 5,414,596 + +0.4 5,414,596 + +0.4 5,414,596 + -0.6 5,414,596 + +0.4 5,414,596 + -0.6 5,414,596 + +0.4 5,414,596 + -0.5 5,414,597 - -0.6 5,414,597 - -0.6 5,414,597 - +0.4 5,414,623 - -0.7 5,414,636 - -0.6 5,414,645 - +0.4 5,414,645 - +0.4 5,414,645 - -0.4 5,414,645 - -0.6 5,414,665 + -0.6 5,414,665 + +0.4 5,414,666 - -0.6 5,414,788 + -0.6 5,414,788 + +0.4 5,414,789 - +0.4 5,414,789 - -0.6 5,414,789 - -0.6 5,414,789 - +0.4 5,414,811 - -0.6 5,414,818 - +0.4 5,414,818 - +0.4 5,414,824 + -1.1 5,414,824 + +0.4 5,414,825 - -1.1 5,414,825 - +0.2 5,414,900 + +0.4 5,414,901 - -1.1 5,414,930 + -0.7 5,415,290 + Pf6N2E2_4681 0.33 +0.4 5,415,290 + Pf6N2E2_4681 0.33 +0.2 5,415,290 + Pf6N2E2_4681 0.33 -0.6 5,415,290 + Pf6N2E2_4681 0.33 -1.1 5,415,290 + Pf6N2E2_4681 0.33 +0.6 5,415,290 + Pf6N2E2_4681 0.33 -2.1 5,415,290 + Pf6N2E2_4681 0.33 -2.1 5,415,290 + Pf6N2E2_4681 0.33 -0.6 5,415,291 - Pf6N2E2_4681 0.33 +0.4 5,415,291 - Pf6N2E2_4681 0.33 +0.4 5,415,291 - Pf6N2E2_4681 0.33 +0.4 5,415,332 + Pf6N2E2_4681 0.37 -0.6 5,415,333 - Pf6N2E2_4681 0.37 -0.0
Or see this region's nucleotide sequence