Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_421 and Pf6N2E2_422 are separated by 551 nucleotides Pf6N2E2_422 and Pf6N2E2_423 are separated by 20 nucleotides Pf6N2E2_423 and Pf6N2E2_424 are separated by 129 nucleotides
Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013
_421
Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863
_422
Pf6N2E2_423 - Putative phosphatase YfbT, at 491,884 to 492,588
_423
Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091
_424
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 489.903 kb on + strand at 489.904 kb on - strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.117 kb on - strand at 490.117 kb on - strand at 490.178 kb on + strand at 490.179 kb on - strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.197 kb on + strand at 490.198 kb on - strand at 490.213 kb on - strand at 490.262 kb on + strand at 490.263 kb on - strand at 490.544 kb on + strand at 490.545 kb on - strand at 490.545 kb on - strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.904 kb on + strand, within Pf6N2E2_422 at 490.904 kb on + strand, within Pf6N2E2_422 at 490.905 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 491.241 kb on + strand, within Pf6N2E2_422 at 491.241 kb on + strand, within Pf6N2E2_422 at 491.242 kb on - strand, within Pf6N2E2_422 at 491.312 kb on - strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand at 491.495 kb on - strand, within Pf6N2E2_422 at 491.519 kb on + strand, within Pf6N2E2_422 at 491.519 kb on + strand, within Pf6N2E2_422 at 491.686 kb on + strand, within Pf6N2E2_422 at 491.687 kb on - strand, within Pf6N2E2_422 at 491.729 kb on + strand, within Pf6N2E2_422 at 491.730 kb on - strand, within Pf6N2E2_422 at 491.786 kb on + strand at 491.787 kb on - strand at 491.817 kb on - strand at 491.819 kb on + strand at 491.820 kb on - strand at 491.861 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.878 kb on - strand at 491.878 kb on - strand at 491.878 kb on - strand at 491.878 kb on - strand at 492.279 kb on + strand, within Pf6N2E2_423 at 492.486 kb on + strand, within Pf6N2E2_423 at 492.526 kb on + strand at 492.526 kb on + strand at 492.527 kb on - strand at 492.527 kb on - strand at 492.527 kb on - strand at 492.584 kb on + strand at 492.584 kb on + strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.660 kb on + strand at 492.714 kb on + strand at 492.715 kb on - strand at 492.746 kb on + strand at 492.746 kb on + strand at 492.747 kb on - strand at 492.747 kb on - strand at 492.747 kb on - strand at 492.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 489,903 + -0.3 489,904 - -0.9 490,106 + +0.2 490,106 + +0.2 490,106 + +0.2 490,107 - -0.8 490,107 - -0.8 490,107 - +0.2 490,107 - -0.8 490,117 - -0.8 490,117 - +0.2 490,178 + +0.2 490,179 - +0.2 490,190 + +0.2 490,190 + -0.9 490,190 + -0.3 490,197 + -0.8 490,198 - +0.2 490,213 - +0.2 490,262 + +0.2 490,263 - +0.2 490,544 + -1.4 490,545 - +0.2 490,545 - -0.9 490,616 + -0.3 490,616 + -0.6 490,616 + +0.2 490,616 + -0.4 490,617 - +0.2 490,617 - +0.2 490,617 - -0.8 490,617 - +0.2 490,617 - +0.2 490,904 + Pf6N2E2_422 0.26 -0.1 490,904 + Pf6N2E2_422 0.26 -0.3 490,905 - Pf6N2E2_422 0.26 +0.2 490,945 - Pf6N2E2_422 0.29 +0.2 490,945 - Pf6N2E2_422 0.29 +0.2 490,945 - Pf6N2E2_422 0.29 -0.8 491,241 + Pf6N2E2_422 0.52 -0.8 491,241 + Pf6N2E2_422 0.52 +0.2 491,242 - Pf6N2E2_422 0.52 -0.8 491,312 - Pf6N2E2_422 0.58 -0.8 491,366 + Pf6N2E2_422 0.62 +1.1 491,366 + Pf6N2E2_422 0.62 -1.5 491,366 + Pf6N2E2_422 0.62 -0.3 491,366 + Pf6N2E2_422 0.62 +0.2 491,366 + Pf6N2E2_422 0.62 -1.8 491,366 + Pf6N2E2_422 0.62 +0.2 491,366 + Pf6N2E2_422 0.62 -0.4 491,366 + Pf6N2E2_422 0.62 +0.2 491,366 + Pf6N2E2_422 0.62 +0.6 491,366 + Pf6N2E2_422 0.62 +0.2 491,367 - Pf6N2E2_422 0.62 +0.2 491,367 - Pf6N2E2_422 0.62 +0.2 491,367 - Pf6N2E2_422 0.62 +0.2 491,367 - -1.8 491,495 - Pf6N2E2_422 0.72 -0.7 491,519 + Pf6N2E2_422 0.73 -0.8 491,519 + Pf6N2E2_422 0.73 +0.2 491,686 + Pf6N2E2_422 0.86 +0.2 491,687 - Pf6N2E2_422 0.86 +0.2 491,729 + Pf6N2E2_422 0.90 +0.2 491,730 - Pf6N2E2_422 0.90 +0.2 491,786 + -0.8 491,787 - +0.2 491,817 - +0.2 491,819 + +0.2 491,820 - +0.2 491,861 + +0.2 491,877 + +1.2 491,877 + -0.8 491,877 + +0.2 491,877 + -0.8 491,878 - +0.2 491,878 - +0.2 491,878 - +0.2 491,878 - +0.2 492,279 + Pf6N2E2_423 0.56 -0.7 492,486 + Pf6N2E2_423 0.85 -0.8 492,526 + -0.2 492,526 + -0.8 492,527 - -1.5 492,527 - +0.2 492,527 - +0.2 492,584 + -2.6 492,584 + +0.2 492,585 - +0.2 492,585 - +0.2 492,585 - +0.2 492,585 - +0.2 492,660 + -0.8 492,714 + +1.1 492,715 - +0.2 492,746 + +0.2 492,746 + +0.2 492,747 - +0.2 492,747 - +0.2 492,747 - +0.2 492,747 - +0.2
Or see this region's nucleotide sequence