Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4075 and Pf6N2E2_4076 are separated by 268 nucleotides Pf6N2E2_4076 and Pf6N2E2_4077 are separated by 378 nucleotides Pf6N2E2_4077 and Pf6N2E2_4078 are separated by 58 nucleotides
Pf6N2E2_4075 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 4,752,543 to 4,753,541
_4075
Pf6N2E2_4076 - L-Proline/Glycine betaine transporter ProP, at 4,753,810 to 4,755,108
_4076
Pf6N2E2_4077 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 4,755,487 to 4,755,891
_4077
Pf6N2E2_4078 - Aldose 1-epimerase, at 4,755,950 to 4,756,849
_4078
Position (kb) 4753
4754
4755
4756 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4752.898 kb on - strand, within Pf6N2E2_4075 at 4752.940 kb on + strand, within Pf6N2E2_4075 at 4752.941 kb on - strand, within Pf6N2E2_4075 at 4752.941 kb on - strand, within Pf6N2E2_4075 at 4752.979 kb on + strand, within Pf6N2E2_4075 at 4753.094 kb on + strand, within Pf6N2E2_4075 at 4753.156 kb on - strand, within Pf6N2E2_4075 at 4753.156 kb on - strand, within Pf6N2E2_4075 at 4753.205 kb on - strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.336 kb on - strand, within Pf6N2E2_4075 at 4753.357 kb on + strand, within Pf6N2E2_4075 at 4753.358 kb on - strand, within Pf6N2E2_4075 at 4753.426 kb on - strand, within Pf6N2E2_4075 at 4753.546 kb on + strand at 4753.546 kb on + strand at 4753.547 kb on - strand at 4753.547 kb on - strand at 4753.547 kb on - strand at 4753.559 kb on + strand at 4753.559 kb on + strand at 4753.559 kb on + strand at 4753.560 kb on - strand at 4753.560 kb on - strand at 4753.560 kb on - strand at 4753.569 kb on + strand at 4753.569 kb on + strand at 4753.569 kb on + strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.582 kb on + strand at 4753.583 kb on - strand at 4753.583 kb on - strand at 4753.588 kb on + strand at 4753.606 kb on + strand at 4753.606 kb on + strand at 4753.606 kb on + strand at 4753.607 kb on - strand at 4753.607 kb on - strand at 4753.617 kb on + strand at 4753.617 kb on + strand at 4753.618 kb on - strand at 4753.618 kb on - strand at 4753.618 kb on - strand at 4753.652 kb on - strand at 4753.652 kb on - strand at 4753.756 kb on + strand at 4753.756 kb on + strand at 4753.757 kb on - strand at 4753.774 kb on + strand at 4753.774 kb on + strand at 4753.811 kb on + strand at 4753.811 kb on + strand at 4753.812 kb on - strand at 4753.812 kb on - strand at 4753.812 kb on - strand at 4753.832 kb on + strand at 4753.841 kb on - strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.875 kb on - strand at 4753.877 kb on + strand at 4753.877 kb on + strand at 4753.878 kb on - strand at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.962 kb on - strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.037 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.229 kb on + strand, within Pf6N2E2_4076 at 4754.230 kb on - strand, within Pf6N2E2_4076 at 4754.230 kb on - strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.462 kb on + strand, within Pf6N2E2_4076 at 4754.462 kb on + strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.483 kb on - strand, within Pf6N2E2_4076 at 4754.483 kb on - strand, within Pf6N2E2_4076 at 4754.516 kb on + strand, within Pf6N2E2_4076 at 4754.517 kb on - strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.540 kb on + strand, within Pf6N2E2_4076 at 4754.541 kb on - strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.753 kb on + strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.754 kb on - strand, within Pf6N2E2_4076 at 4754.996 kb on + strand at 4754.996 kb on + strand at 4755.041 kb on + strand at 4755.041 kb on + strand at 4755.042 kb on - strand at 4755.124 kb on + strand at 4755.124 kb on + strand at 4755.124 kb on + strand at 4755.124 kb on + strand at 4755.125 kb on - strand at 4755.125 kb on - strand at 4755.125 kb on - strand at 4755.125 kb on - strand at 4755.125 kb on - strand at 4755.125 kb on - strand at 4755.126 kb on + strand at 4755.127 kb on - strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.208 kb on + strand at 4755.209 kb on - strand at 4755.209 kb on - strand at 4755.209 kb on - strand at 4755.209 kb on - strand at 4755.218 kb on + strand at 4755.218 kb on + strand at 4755.261 kb on + strand at 4755.261 kb on + strand at 4755.261 kb on + strand at 4755.262 kb on - strand at 4755.271 kb on + strand at 4755.273 kb on + strand at 4755.273 kb on + strand at 4755.273 kb on + strand at 4755.273 kb on + strand at 4755.274 kb on - strand at 4755.274 kb on - strand at 4755.290 kb on + strand at 4755.290 kb on + strand at 4755.291 kb on - strand at 4755.291 kb on - strand at 4755.291 kb on - strand at 4755.332 kb on + strand at 4755.333 kb on - strand at 4755.335 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.403 kb on + strand at 4755.404 kb on - strand at 4755.451 kb on + strand at 4755.451 kb on + strand at 4755.451 kb on + strand at 4755.451 kb on + strand at 4755.452 kb on - strand at 4755.491 kb on + strand at 4755.492 kb on - strand at 4755.492 kb on - strand at 4755.492 kb on - strand at 4755.724 kb on + strand, within Pf6N2E2_4077 at 4755.726 kb on + strand, within Pf6N2E2_4077 at 4755.727 kb on - strand, within Pf6N2E2_4077 at 4755.955 kb on + strand at 4755.955 kb on + strand at 4755.956 kb on - strand at 4756.061 kb on + strand, within Pf6N2E2_4078 at 4756.061 kb on + strand, within Pf6N2E2_4078 at 4756.061 kb on + strand, within Pf6N2E2_4078 at 4756.061 kb on + strand, within Pf6N2E2_4078 at 4756.062 kb on - strand, within Pf6N2E2_4078 at 4756.062 kb on - strand, within Pf6N2E2_4078 at 4756.062 kb on - strand, within Pf6N2E2_4078
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 4,752,898 - Pf6N2E2_4075 0.36 -3.5 4,752,940 + Pf6N2E2_4075 0.40 -1.7 4,752,941 - Pf6N2E2_4075 0.40 -2.1 4,752,941 - Pf6N2E2_4075 0.40 -2.1 4,752,979 + Pf6N2E2_4075 0.44 -2.8 4,753,094 + Pf6N2E2_4075 0.55 -1.6 4,753,156 - Pf6N2E2_4075 0.61 -1.1 4,753,156 - Pf6N2E2_4075 0.61 -3.1 4,753,205 - Pf6N2E2_4075 0.66 -3.4 4,753,335 + Pf6N2E2_4075 0.79 -3.0 4,753,335 + Pf6N2E2_4075 0.79 -4.1 4,753,335 + Pf6N2E2_4075 0.79 -0.6 4,753,336 - Pf6N2E2_4075 0.79 -2.7 4,753,357 + Pf6N2E2_4075 0.81 -2.6 4,753,358 - Pf6N2E2_4075 0.82 -2.1 4,753,426 - Pf6N2E2_4075 0.88 -2.3 4,753,546 + -2.1 4,753,546 + -2.5 4,753,547 - -1.6 4,753,547 - -1.6 4,753,547 - +0.4 4,753,559 + -1.5 4,753,559 + -1.3 4,753,559 + -1.1 4,753,560 - -1.0 4,753,560 - -0.5 4,753,560 - -0.6 4,753,569 + -1.6 4,753,569 + +0.4 4,753,569 + -1.5 4,753,570 - -0.8 4,753,570 - -1.1 4,753,570 - +0.4 4,753,570 - -1.5 4,753,570 - +0.4 4,753,570 - -1.4 4,753,582 + -1.2 4,753,583 - -0.6 4,753,583 - +0.4 4,753,588 + -0.6 4,753,606 + -0.6 4,753,606 + -1.3 4,753,606 + -0.5 4,753,607 - -0.3 4,753,607 - +0.4 4,753,617 + -1.5 4,753,617 + -1.3 4,753,618 - -1.1 4,753,618 - -0.6 4,753,618 - -0.6 4,753,652 - -0.7 4,753,652 - -0.6 4,753,756 + -0.7 4,753,756 + +0.4 4,753,757 - -1.1 4,753,774 + +0.4 4,753,774 + -0.3 4,753,811 + -1.1 4,753,811 + -1.1 4,753,812 - -1.6 4,753,812 - +0.4 4,753,812 - -0.6 4,753,832 + +0.4 4,753,841 - +0.4 4,753,874 + +0.4 4,753,874 + +0.4 4,753,874 + -1.0 4,753,874 + -0.6 4,753,874 + +0.4 4,753,875 - -0.6 4,753,877 + -0.5 4,753,877 + -0.6 4,753,878 - +0.4 4,753,961 + Pf6N2E2_4076 0.12 -0.6 4,753,961 + Pf6N2E2_4076 0.12 +0.4 4,753,961 + Pf6N2E2_4076 0.12 -1.1 4,753,962 - Pf6N2E2_4076 0.12 -0.6 4,754,018 + Pf6N2E2_4076 0.16 -0.7 4,754,018 + Pf6N2E2_4076 0.16 -0.6 4,754,018 + Pf6N2E2_4076 0.16 +0.4 4,754,018 + Pf6N2E2_4076 0.16 -0.6 4,754,018 + Pf6N2E2_4076 0.16 +0.4 4,754,019 - Pf6N2E2_4076 0.16 +0.4 4,754,019 - Pf6N2E2_4076 0.16 +0.4 4,754,019 - Pf6N2E2_4076 0.16 -1.1 4,754,019 - Pf6N2E2_4076 0.16 -1.7 4,754,019 - Pf6N2E2_4076 0.16 -0.6 4,754,037 + Pf6N2E2_4076 0.17 -0.6 4,754,063 + Pf6N2E2_4076 0.19 +0.4 4,754,063 + Pf6N2E2_4076 0.19 -0.7 4,754,063 + Pf6N2E2_4076 0.19 -1.1 4,754,063 + Pf6N2E2_4076 0.19 -1.1 4,754,064 - Pf6N2E2_4076 0.20 +0.4 4,754,064 - Pf6N2E2_4076 0.20 +0.4 4,754,064 - Pf6N2E2_4076 0.20 +0.1 4,754,064 - Pf6N2E2_4076 0.20 -1.6 4,754,105 + Pf6N2E2_4076 0.23 -0.6 4,754,105 + Pf6N2E2_4076 0.23 -0.4 4,754,105 + Pf6N2E2_4076 0.23 -0.6 4,754,105 + Pf6N2E2_4076 0.23 +0.4 4,754,105 + Pf6N2E2_4076 0.23 -1.3 4,754,105 + Pf6N2E2_4076 0.23 -1.3 4,754,106 - Pf6N2E2_4076 0.23 +0.4 4,754,106 - Pf6N2E2_4076 0.23 -0.6 4,754,106 - Pf6N2E2_4076 0.23 -0.6 4,754,106 - Pf6N2E2_4076 0.23 -0.6 4,754,106 - Pf6N2E2_4076 0.23 -0.6 4,754,229 + Pf6N2E2_4076 0.32 +0.4 4,754,230 - Pf6N2E2_4076 0.32 -0.6 4,754,230 - Pf6N2E2_4076 0.32 +0.4 4,754,264 + Pf6N2E2_4076 0.35 -0.5 4,754,264 + Pf6N2E2_4076 0.35 -0.9 4,754,264 + Pf6N2E2_4076 0.35 -1.1 4,754,462 + Pf6N2E2_4076 0.50 +0.4 4,754,462 + Pf6N2E2_4076 0.50 -1.9 4,754,463 - Pf6N2E2_4076 0.50 +0.4 4,754,463 - Pf6N2E2_4076 0.50 -1.6 4,754,463 - Pf6N2E2_4076 0.50 -1.0 4,754,463 - Pf6N2E2_4076 0.50 -0.9 4,754,463 - Pf6N2E2_4076 0.50 -0.6 4,754,463 - Pf6N2E2_4076 0.50 +0.4 4,754,483 - Pf6N2E2_4076 0.52 -1.1 4,754,483 - Pf6N2E2_4076 0.52 +0.4 4,754,516 + Pf6N2E2_4076 0.54 +0.4 4,754,517 - Pf6N2E2_4076 0.54 -1.1 4,754,538 + Pf6N2E2_4076 0.56 -1.1 4,754,538 + Pf6N2E2_4076 0.56 -0.6 4,754,538 + Pf6N2E2_4076 0.56 -1.6 4,754,538 + Pf6N2E2_4076 0.56 +0.4 4,754,538 + Pf6N2E2_4076 0.56 +0.2 4,754,538 + Pf6N2E2_4076 0.56 -0.8 4,754,539 - Pf6N2E2_4076 0.56 +0.4 4,754,539 - Pf6N2E2_4076 0.56 -0.6 4,754,539 - Pf6N2E2_4076 0.56 -1.1 4,754,539 - Pf6N2E2_4076 0.56 -1.1 4,754,539 - Pf6N2E2_4076 0.56 -0.6 4,754,539 - Pf6N2E2_4076 0.56 -0.6 4,754,539 - Pf6N2E2_4076 0.56 -1.1 4,754,539 - Pf6N2E2_4076 0.56 -1.3 4,754,539 - Pf6N2E2_4076 0.56 +0.4 4,754,540 + Pf6N2E2_4076 0.56 -0.6 4,754,541 - Pf6N2E2_4076 0.56 -0.6 4,754,753 + Pf6N2E2_4076 0.73 -0.6 4,754,753 + Pf6N2E2_4076 0.73 -1.1 4,754,753 + Pf6N2E2_4076 0.73 +0.4 4,754,753 + Pf6N2E2_4076 0.73 +2.4 4,754,753 + Pf6N2E2_4076 0.73 +0.4 4,754,753 + Pf6N2E2_4076 0.73 +0.4 4,754,753 + Pf6N2E2_4076 0.73 -0.6 4,754,753 + Pf6N2E2_4076 0.73 -0.7 4,754,753 + Pf6N2E2_4076 0.73 -0.7 4,754,753 + Pf6N2E2_4076 0.73 -1.6 4,754,753 + Pf6N2E2_4076 0.73 -0.6 4,754,754 - Pf6N2E2_4076 0.73 -0.6 4,754,754 - Pf6N2E2_4076 0.73 -0.6 4,754,754 - Pf6N2E2_4076 0.73 -1.3 4,754,754 - Pf6N2E2_4076 0.73 -0.6 4,754,754 - Pf6N2E2_4076 0.73 -0.4 4,754,754 - Pf6N2E2_4076 0.73 +0.4 4,754,754 - Pf6N2E2_4076 0.73 -1.6 4,754,754 - Pf6N2E2_4076 0.73 +0.4 4,754,996 + +0.4 4,754,996 + +0.4 4,755,041 + +0.4 4,755,041 + +0.4 4,755,042 - -0.5 4,755,124 + -1.1 4,755,124 + -1.1 4,755,124 + -2.6 4,755,124 + +0.4 4,755,125 - -0.6 4,755,125 - -0.6 4,755,125 - +0.4 4,755,125 - +0.4 4,755,125 - -1.5 4,755,125 - -1.9 4,755,126 + -0.9 4,755,127 - -0.6 4,755,208 + +0.4 4,755,208 + +0.4 4,755,208 + -0.8 4,755,208 + +0.4 4,755,208 + +0.4 4,755,208 + -0.2 4,755,208 + +0.4 4,755,208 + -1.6 4,755,208 + +0.4 4,755,208 + +0.0 4,755,208 + -0.5 4,755,208 + -0.6 4,755,209 - -1.9 4,755,209 - -2.1 4,755,209 - -0.3 4,755,209 - -3.5 4,755,218 + -0.6 4,755,218 + -0.6 4,755,261 + -0.4 4,755,261 + +0.4 4,755,261 + -0.6 4,755,262 - -2.0 4,755,271 + -0.1 4,755,273 + +0.4 4,755,273 + -1.1 4,755,273 + +0.4 4,755,273 + +0.4 4,755,274 - -0.6 4,755,274 - +0.4 4,755,290 + +0.4 4,755,290 + +0.4 4,755,291 - -2.4 4,755,291 - -2.5 4,755,291 - +0.4 4,755,332 + +0.4 4,755,333 - -2.7 4,755,335 + +0.4 4,755,403 + -0.1 4,755,403 + -0.6 4,755,403 + -0.3 4,755,403 + -1.6 4,755,403 + +0.4 4,755,403 + -1.1 4,755,403 + +0.4 4,755,403 + -0.7 4,755,403 + -1.4 4,755,404 - +0.4 4,755,451 + +0.4 4,755,451 + -0.1 4,755,451 + +0.4 4,755,451 + +0.1 4,755,452 - -0.6 4,755,491 + +0.4 4,755,492 - +0.4 4,755,492 - +0.4 4,755,492 - -2.2 4,755,724 + Pf6N2E2_4077 0.59 +0.4 4,755,726 + Pf6N2E2_4077 0.59 +1.4 4,755,727 - Pf6N2E2_4077 0.59 +0.4 4,755,955 + -1.9 4,755,955 + +0.4 4,755,956 - -0.8 4,756,061 + Pf6N2E2_4078 0.12 -0.6 4,756,061 + Pf6N2E2_4078 0.12 -0.8 4,756,061 + Pf6N2E2_4078 0.12 +0.4 4,756,061 + Pf6N2E2_4078 0.12 -1.1 4,756,062 - Pf6N2E2_4078 0.12 +1.4 4,756,062 - Pf6N2E2_4078 0.12 -0.4 4,756,062 - Pf6N2E2_4078 0.12 +0.4
Or see this region's nucleotide sequence