Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3984

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3983 and Pf6N2E2_3984 are separated by 14 nucleotidesPf6N2E2_3984 and Pf6N2E2_3985 are separated by 232 nucleotides Pf6N2E2_3983 - Membrane bound c-di-GMP receptor LapD, at 4,648,400 to 4,650,388 _3983 Pf6N2E2_3984 - T1SS associated transglutaminase-like cysteine proteinase LapP, at 4,650,403 to 4,651,065 _3984 Pf6N2E2_3985 - Predicted regulator PutR for proline utilization, GntR family, at 4,651,298 to 4,651,990 _3985 Position (kb) 4650 4651 4652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4649.587 kb on - strand, within Pf6N2E2_3983at 4649.644 kb on - strand, within Pf6N2E2_3983at 4649.644 kb on - strand, within Pf6N2E2_3983at 4649.853 kb on + strand, within Pf6N2E2_3983at 4649.853 kb on + strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4649.854 kb on - strand, within Pf6N2E2_3983at 4650.162 kb on + strand, within Pf6N2E2_3983at 4650.162 kb on + strand, within Pf6N2E2_3983at 4650.163 kb on - strand, within Pf6N2E2_3983at 4650.288 kb on + strandat 4650.288 kb on + strandat 4650.289 kb on - strandat 4650.358 kb on + strandat 4650.359 kb on - strandat 4650.404 kb on + strandat 4650.404 kb on + strandat 4650.404 kb on + strandat 4650.404 kb on + strandat 4650.404 kb on + strandat 4650.404 kb on + strandat 4650.405 kb on - strandat 4650.405 kb on - strandat 4650.408 kb on + strandat 4650.409 kb on - strandat 4650.605 kb on - strand, within Pf6N2E2_3984at 4650.632 kb on + strand, within Pf6N2E2_3984at 4650.632 kb on + strand, within Pf6N2E2_3984at 4650.632 kb on + strand, within Pf6N2E2_3984at 4650.632 kb on + strand, within Pf6N2E2_3984at 4650.633 kb on - strand, within Pf6N2E2_3984at 4650.633 kb on - strand, within Pf6N2E2_3984at 4650.633 kb on - strand, within Pf6N2E2_3984at 4650.636 kb on - strand, within Pf6N2E2_3984at 4650.636 kb on - strand, within Pf6N2E2_3984at 4650.636 kb on - strand, within Pf6N2E2_3984at 4650.636 kb on - strand, within Pf6N2E2_3984at 4650.680 kb on + strand, within Pf6N2E2_3984at 4650.681 kb on - strand, within Pf6N2E2_3984at 4650.681 kb on - strand, within Pf6N2E2_3984at 4650.731 kb on + strand, within Pf6N2E2_3984at 4650.731 kb on + strand, within Pf6N2E2_3984at 4650.731 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.746 kb on + strand, within Pf6N2E2_3984at 4650.747 kb on - strand, within Pf6N2E2_3984at 4650.747 kb on - strand, within Pf6N2E2_3984at 4650.747 kb on - strand, within Pf6N2E2_3984at 4650.836 kb on + strand, within Pf6N2E2_3984at 4650.836 kb on + strand, within Pf6N2E2_3984at 4650.836 kb on + strand, within Pf6N2E2_3984at 4650.837 kb on - strand, within Pf6N2E2_3984at 4650.837 kb on - strand, within Pf6N2E2_3984at 4650.962 kb on + strand, within Pf6N2E2_3984at 4650.962 kb on + strand, within Pf6N2E2_3984at 4650.962 kb on + strand, within Pf6N2E2_3984at 4650.962 kb on + strand, within Pf6N2E2_3984at 4650.962 kb on + strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.963 kb on - strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.964 kb on + strand, within Pf6N2E2_3984at 4650.965 kb on - strand, within Pf6N2E2_3984at 4650.965 kb on - strand, within Pf6N2E2_3984at 4650.965 kb on - strand, within Pf6N2E2_3984at 4650.965 kb on - strand, within Pf6N2E2_3984at 4650.965 kb on - strand, within Pf6N2E2_3984at 4651.054 kb on + strandat 4651.055 kb on - strandat 4651.055 kb on - strandat 4651.103 kb on - strandat 4651.103 kb on - strandat 4651.154 kb on + strandat 4651.193 kb on - strandat 4651.199 kb on + strandat 4651.199 kb on + strandat 4651.199 kb on + strandat 4651.199 kb on + strandat 4651.200 kb on - strandat 4651.250 kb on + strandat 4651.250 kb on + strandat 4651.250 kb on + strandat 4651.251 kb on - strandat 4651.534 kb on + strand, within Pf6N2E2_3985at 4651.534 kb on + strand, within Pf6N2E2_3985at 4651.534 kb on + strand, within Pf6N2E2_3985at 4651.535 kb on - strand, within Pf6N2E2_3985at 4651.583 kb on + strand, within Pf6N2E2_3985at 4651.583 kb on + strand, within Pf6N2E2_3985at 4651.584 kb on - strand, within Pf6N2E2_3985at 4651.584 kb on - strand, within Pf6N2E2_3985at 4651.584 kb on - strand, within Pf6N2E2_3985at 4651.584 kb on - strand, within Pf6N2E2_3985at 4651.670 kb on + strand, within Pf6N2E2_3985at 4651.670 kb on + strand, within Pf6N2E2_3985at 4651.671 kb on - strand, within Pf6N2E2_3985at 4651.671 kb on - strand, within Pf6N2E2_3985at 4651.917 kb on + strand, within Pf6N2E2_3985at 4652.027 kb on + strandat 4652.028 kb on - strandat 4652.028 kb on - strandat 4652.031 kb on + strandat 4652.031 kb on + strandat 4652.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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4,649,587 - Pf6N2E2_3983 0.60 -2.1
4,649,644 - Pf6N2E2_3983 0.63 +0.4
4,649,644 - Pf6N2E2_3983 0.63 -0.6
4,649,853 + Pf6N2E2_3983 0.73 +0.4
4,649,853 + Pf6N2E2_3983 0.73 +0.4
4,649,854 - Pf6N2E2_3983 0.73 -2.1
4,649,854 - Pf6N2E2_3983 0.73 -0.6
4,649,854 - Pf6N2E2_3983 0.73 -1.6
4,649,854 - Pf6N2E2_3983 0.73 -0.6
4,649,854 - Pf6N2E2_3983 0.73 -1.3
4,649,854 - Pf6N2E2_3983 0.73 -0.6
4,650,162 + Pf6N2E2_3983 0.89 +0.4
4,650,162 + Pf6N2E2_3983 0.89 -0.3
4,650,163 - Pf6N2E2_3983 0.89 -2.1
4,650,288 + +0.4
4,650,288 + -0.6
4,650,289 - -0.0
4,650,358 + +0.4
4,650,359 - +0.4
4,650,404 + -0.6
4,650,404 + +0.4
4,650,404 + +0.4
4,650,404 + +0.4
4,650,404 + +0.4
4,650,404 + -1.9
4,650,405 - -0.6
4,650,405 - -0.6
4,650,408 + -1.1
4,650,409 - -1.6
4,650,605 - Pf6N2E2_3984 0.30 -1.9
4,650,632 + Pf6N2E2_3984 0.35 -3.1
4,650,632 + Pf6N2E2_3984 0.35 +0.4
4,650,632 + Pf6N2E2_3984 0.35 -1.1
4,650,632 + Pf6N2E2_3984 0.35 -3.0
4,650,633 - Pf6N2E2_3984 0.35 -0.6
4,650,633 - Pf6N2E2_3984 0.35 +0.4
4,650,633 - Pf6N2E2_3984 0.35 -0.6
4,650,636 - Pf6N2E2_3984 0.35 +0.4
4,650,636 - Pf6N2E2_3984 0.35 -0.6
4,650,636 - Pf6N2E2_3984 0.35 +0.4
4,650,636 - Pf6N2E2_3984 0.35 -1.9
4,650,680 + Pf6N2E2_3984 0.42 +0.4
4,650,681 - Pf6N2E2_3984 0.42 +0.4
4,650,681 - Pf6N2E2_3984 0.42 -0.6
4,650,731 + Pf6N2E2_3984 0.49 -1.1
4,650,731 + Pf6N2E2_3984 0.49 -2.6
4,650,731 + Pf6N2E2_3984 0.49 -0.6
4,650,746 + Pf6N2E2_3984 0.52 -0.6
4,650,746 + Pf6N2E2_3984 0.52 +0.4
4,650,746 + Pf6N2E2_3984 0.52 -2.8
4,650,746 + Pf6N2E2_3984 0.52 -0.6
4,650,746 + Pf6N2E2_3984 0.52 -0.6
4,650,746 + Pf6N2E2_3984 0.52 -2.9
4,650,747 - Pf6N2E2_3984 0.52 -0.3
4,650,747 - Pf6N2E2_3984 0.52 +0.4
4,650,747 - Pf6N2E2_3984 0.52 -1.3
4,650,836 + Pf6N2E2_3984 0.65 +0.4
4,650,836 + Pf6N2E2_3984 0.65 -1.1
4,650,836 + Pf6N2E2_3984 0.65 -1.1
4,650,837 - Pf6N2E2_3984 0.65 -1.7
4,650,837 - Pf6N2E2_3984 0.65 -1.1
4,650,962 + Pf6N2E2_3984 0.84 +0.4
4,650,962 + Pf6N2E2_3984 0.84 +1.0
4,650,962 + Pf6N2E2_3984 0.84 -0.6
4,650,962 + Pf6N2E2_3984 0.84 +0.4
4,650,962 + Pf6N2E2_3984 0.84 +0.4
4,650,963 - Pf6N2E2_3984 0.84 -0.6
4,650,963 - Pf6N2E2_3984 0.84 -0.6
4,650,963 - Pf6N2E2_3984 0.84 -1.1
4,650,963 - Pf6N2E2_3984 0.84 -4.3
4,650,963 - Pf6N2E2_3984 0.84 -3.0
4,650,963 - Pf6N2E2_3984 0.84 -1.6
4,650,963 - Pf6N2E2_3984 0.84 -2.9
4,650,963 - Pf6N2E2_3984 0.84 +0.4
4,650,963 - Pf6N2E2_3984 0.84 +0.4
4,650,964 + Pf6N2E2_3984 0.85 +0.4
4,650,964 + Pf6N2E2_3984 0.85 -2.7
4,650,964 + Pf6N2E2_3984 0.85 +0.4
4,650,964 + Pf6N2E2_3984 0.85 -0.6
4,650,964 + Pf6N2E2_3984 0.85 -1.1
4,650,964 + Pf6N2E2_3984 0.85 -0.6
4,650,965 - Pf6N2E2_3984 0.85 -3.6
4,650,965 - Pf6N2E2_3984 0.85 -1.1
4,650,965 - Pf6N2E2_3984 0.85 -0.6
4,650,965 - Pf6N2E2_3984 0.85 -0.6
4,650,965 - Pf6N2E2_3984 0.85 -0.6
4,651,054 + -1.1
4,651,055 - +0.4
4,651,055 - -0.6
4,651,103 - +0.8
4,651,103 - -0.6
4,651,154 + +0.4
4,651,193 - -0.4
4,651,199 + +0.4
4,651,199 + -0.3
4,651,199 + -0.0
4,651,199 + +0.4
4,651,200 - -0.5
4,651,250 + -0.6
4,651,250 + -1.1
4,651,250 + -0.6
4,651,251 - +0.2
4,651,534 + Pf6N2E2_3985 0.34 -1.0
4,651,534 + Pf6N2E2_3985 0.34 -1.1
4,651,534 + Pf6N2E2_3985 0.34 +0.4
4,651,535 - Pf6N2E2_3985 0.34 +0.4
4,651,583 + Pf6N2E2_3985 0.41 +0.4
4,651,583 + Pf6N2E2_3985 0.41 -1.9
4,651,584 - Pf6N2E2_3985 0.41 -1.4
4,651,584 - Pf6N2E2_3985 0.41 -0.6
4,651,584 - Pf6N2E2_3985 0.41 -1.1
4,651,584 - Pf6N2E2_3985 0.41 -0.7
4,651,670 + Pf6N2E2_3985 0.54 -0.4
4,651,670 + Pf6N2E2_3985 0.54 -1.1
4,651,671 - Pf6N2E2_3985 0.54 +0.4
4,651,671 - Pf6N2E2_3985 0.54 +0.4
4,651,917 + Pf6N2E2_3985 0.89 -1.0
4,652,027 + -0.6
4,652,028 - -0.6
4,652,028 - -0.6
4,652,031 + +0.4
4,652,031 + +0.4
4,652,032 - -0.6

Or see this region's nucleotide sequence