Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3826 and Pf6N2E2_3827 are separated by 491 nucleotides Pf6N2E2_3827 and Pf6N2E2_3828 overlap by 2 nucleotides Pf6N2E2_3828 and Pf6N2E2_3829 are separated by 118 nucleotides Pf6N2E2_3829 and Pf6N2E2_3830 are separated by 39 nucleotides Pf6N2E2_3830 and Pf6N2E2_3831 are separated by 1 nucleotides
Pf6N2E2_3826 - Nitrogen regulation protein NR(I), at 4,460,946 to 4,462,382
_3826
Pf6N2E2_3827 - FIG00955429: hypothetical protein, at 4,462,874 to 4,463,314
_3827
Pf6N2E2_3828 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 4,463,313 to 4,463,768
_3828
Pf6N2E2_3829 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 4,463,887 to 4,464,369
_3829
Pf6N2E2_3830 - Glutaredoxin 3 (Grx3), at 4,464,409 to 4,464,663
_3830
Pf6N2E2_3831 - FIG136845: Rhodanese-related sulfurtransferase, at 4,464,665 to 4,465,078
_3831
Position (kb) 4463
4464 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.391 kb on - strand at 4462.391 kb on - strand at 4462.484 kb on - strand at 4462.647 kb on - strand at 4462.669 kb on + strand at 4462.704 kb on - strand at 4462.730 kb on + strand at 4462.732 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.849 kb on - strand at 4462.875 kb on + strand at 4462.875 kb on + strand at 4462.875 kb on + strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4463.028 kb on - strand, within Pf6N2E2_3827 at 4463.028 kb on - strand, within Pf6N2E2_3827 at 4463.142 kb on - strand, within Pf6N2E2_3827 at 4463.142 kb on - strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.279 kb on - strand at 4463.472 kb on + strand, within Pf6N2E2_3828 at 4463.472 kb on + strand, within Pf6N2E2_3828 at 4463.473 kb on - strand, within Pf6N2E2_3828 at 4463.473 kb on - strand, within Pf6N2E2_3828 at 4463.547 kb on - strand, within Pf6N2E2_3828 at 4463.737 kb on - strand at 4463.737 kb on - strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.767 kb on - strand at 4463.767 kb on - strand at 4463.888 kb on + strand at 4463.888 kb on + strand at 4463.889 kb on - strand at 4463.889 kb on - strand at 4463.939 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.383 kb on + strand at 4464.384 kb on - strand at 4464.384 kb on - strand at 4464.384 kb on - strand at 4464.384 kb on - strand at 4464.384 kb on - strand at 4464.435 kb on + strand, within Pf6N2E2_3830 at 4464.605 kb on + strand, within Pf6N2E2_3830 at 4464.605 kb on + strand, within Pf6N2E2_3830 at 4464.605 kb on + strand, within Pf6N2E2_3830 at 4464.605 kb on + strand, within Pf6N2E2_3830 at 4464.606 kb on - strand, within Pf6N2E2_3830 at 4464.606 kb on - strand, within Pf6N2E2_3830 at 4464.606 kb on - strand, within Pf6N2E2_3830 at 4464.623 kb on + strand, within Pf6N2E2_3830 at 4464.632 kb on + strand, within Pf6N2E2_3830 at 4464.704 kb on - strand at 4464.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 4,462,390 + -1.0 4,462,390 + +0.4 4,462,390 + -0.6 4,462,390 + +0.4 4,462,390 + -0.6 4,462,390 + -0.6 4,462,391 - -0.3 4,462,391 - +0.4 4,462,484 - -0.6 4,462,647 - +0.4 4,462,669 + -0.7 4,462,704 - -0.7 4,462,730 + +0.4 4,462,732 + +0.4 4,462,797 + -0.9 4,462,797 + -0.6 4,462,797 + +1.4 4,462,797 + +0.4 4,462,797 + +0.4 4,462,849 - +0.4 4,462,875 + -0.6 4,462,875 + +0.4 4,462,875 + -0.6 4,462,876 - -0.6 4,462,876 - +0.4 4,462,876 - -1.3 4,462,876 - -0.6 4,462,876 - -0.6 4,462,876 - -0.6 4,462,876 - -0.5 4,463,028 - Pf6N2E2_3827 0.35 +0.4 4,463,028 - Pf6N2E2_3827 0.35 +0.4 4,463,142 - Pf6N2E2_3827 0.61 -1.2 4,463,142 - Pf6N2E2_3827 0.61 -0.4 4,463,249 + Pf6N2E2_3827 0.85 -1.6 4,463,249 + Pf6N2E2_3827 0.85 -0.8 4,463,249 + Pf6N2E2_3827 0.85 -0.7 4,463,249 + Pf6N2E2_3827 0.85 -0.6 4,463,249 + Pf6N2E2_3827 0.85 -0.9 4,463,250 - Pf6N2E2_3827 0.85 -0.3 4,463,250 - Pf6N2E2_3827 0.85 -0.1 4,463,250 - Pf6N2E2_3827 0.85 -0.6 4,463,250 - Pf6N2E2_3827 0.85 -0.5 4,463,250 - Pf6N2E2_3827 0.85 -0.6 4,463,250 - Pf6N2E2_3827 0.85 +0.4 4,463,278 + +0.4 4,463,278 + -1.2 4,463,278 + -0.6 4,463,278 + +0.4 4,463,278 + -0.4 4,463,278 + -0.9 4,463,278 + -1.2 4,463,279 - -1.9 4,463,472 + Pf6N2E2_3828 0.35 -2.1 4,463,472 + Pf6N2E2_3828 0.35 -1.1 4,463,473 - Pf6N2E2_3828 0.35 +0.4 4,463,473 - Pf6N2E2_3828 0.35 -1.1 4,463,547 - Pf6N2E2_3828 0.51 +0.4 4,463,737 - +0.4 4,463,737 - +0.4 4,463,764 + -0.5 4,463,764 + +0.4 4,463,764 + +0.4 4,463,764 + +0.4 4,463,764 + -2.1 4,463,765 - -0.7 4,463,765 - -0.6 4,463,765 - -1.1 4,463,765 - -0.6 4,463,767 - +0.4 4,463,767 - -1.1 4,463,888 + -0.3 4,463,888 + +0.4 4,463,889 - +0.4 4,463,889 - +0.4 4,463,939 + Pf6N2E2_3829 0.11 -0.6 4,464,299 + Pf6N2E2_3829 0.85 +0.4 4,464,299 + Pf6N2E2_3829 0.85 +0.4 4,464,299 + Pf6N2E2_3829 0.85 +0.4 4,464,299 + Pf6N2E2_3829 0.85 -0.6 4,464,299 + Pf6N2E2_3829 0.85 -1.2 4,464,300 - Pf6N2E2_3829 0.86 +0.4 4,464,300 - Pf6N2E2_3829 0.86 +0.4 4,464,300 - Pf6N2E2_3829 0.86 +0.4 4,464,300 - Pf6N2E2_3829 0.86 -0.6 4,464,300 - Pf6N2E2_3829 0.86 +0.4 4,464,383 + +0.4 4,464,384 - -0.6 4,464,384 - -0.6 4,464,384 - -0.6 4,464,384 - +0.4 4,464,384 - +0.4 4,464,435 + Pf6N2E2_3830 0.10 -0.6 4,464,605 + Pf6N2E2_3830 0.77 -0.6 4,464,605 + Pf6N2E2_3830 0.77 +0.4 4,464,605 + Pf6N2E2_3830 0.77 -0.6 4,464,605 + Pf6N2E2_3830 0.77 +0.4 4,464,606 - Pf6N2E2_3830 0.77 -0.6 4,464,606 - Pf6N2E2_3830 0.77 +0.4 4,464,606 - Pf6N2E2_3830 0.77 +0.4 4,464,623 + Pf6N2E2_3830 0.84 -0.6 4,464,632 + Pf6N2E2_3830 0.87 -0.2 4,464,704 - -3.2 4,464,704 - +0.4
Or see this region's nucleotide sequence