Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3825

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3823 and Pf6N2E2_3824 overlap by 4 nucleotidesPf6N2E2_3824 and Pf6N2E2_3825 are separated by 254 nucleotidesPf6N2E2_3825 and Pf6N2E2_3826 overlap by 4 nucleotides Pf6N2E2_3823 - FIG00956533: hypothetical protein, at 4,458,471 to 4,458,989 _3823 Pf6N2E2_3824 - FIG00953806: hypothetical protein, at 4,458,986 to 4,459,609 _3824 Pf6N2E2_3825 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 4,459,864 to 4,460,949 _3825 Pf6N2E2_3826 - Nitrogen regulation protein NR(I), at 4,460,946 to 4,462,382 _3826 Position (kb) 4459 4460 4461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.420 kb on - strand, within Pf6N2E2_3824at 4459.477 kb on + strand, within Pf6N2E2_3824at 4459.477 kb on + strand, within Pf6N2E2_3824at 4459.478 kb on - strand, within Pf6N2E2_3824at 4459.631 kb on - strandat 4459.631 kb on - strandat 4459.633 kb on - strandat 4459.796 kb on - strandat 4459.806 kb on + strandat 4459.806 kb on + strandat 4459.843 kb on + strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.873 kb on - strandat 4459.883 kb on + strandat 4459.883 kb on + strandat 4459.883 kb on + strandat 4459.884 kb on - strandat 4459.884 kb on - strandat 4459.951 kb on + strandat 4460.143 kb on + strand, within Pf6N2E2_3825at 4460.144 kb on - strand, within Pf6N2E2_3825at 4460.221 kb on - strand, within Pf6N2E2_3825at 4460.372 kb on - strand, within Pf6N2E2_3825at 4460.372 kb on - strand, within Pf6N2E2_3825at 4460.542 kb on + strand, within Pf6N2E2_3825at 4460.542 kb on + strand, within Pf6N2E2_3825at 4460.543 kb on - strand, within Pf6N2E2_3825at 4460.955 kb on - strandat 4461.228 kb on + strand, within Pf6N2E2_3826at 4461.250 kb on - strand, within Pf6N2E2_3826at 4461.250 kb on - strand, within Pf6N2E2_3826at 4461.733 kb on - strand, within Pf6N2E2_3826at 4461.869 kb on + strand, within Pf6N2E2_3826at 4461.870 kb on - strand, within Pf6N2E2_3826at 4461.870 kb on - strand, within Pf6N2E2_3826

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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4,459,049 + Pf6N2E2_3824 0.10 -0.3
4,459,049 + Pf6N2E2_3824 0.10 -0.5
4,459,049 + Pf6N2E2_3824 0.10 +0.4
4,459,049 + Pf6N2E2_3824 0.10 +0.4
4,459,049 + Pf6N2E2_3824 0.10 -0.6
4,459,049 + Pf6N2E2_3824 0.10 +0.4
4,459,049 + Pf6N2E2_3824 0.10 +0.4
4,459,049 + Pf6N2E2_3824 0.10 +0.2
4,459,050 - Pf6N2E2_3824 0.10 +0.4
4,459,050 - Pf6N2E2_3824 0.10 -1.2
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 -1.2
4,459,050 - Pf6N2E2_3824 0.10 +0.4
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 -1.2
4,459,050 - Pf6N2E2_3824 0.10 +0.4
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 -1.2
4,459,051 + Pf6N2E2_3824 0.10 +0.4
4,459,051 + Pf6N2E2_3824 0.10 -0.6
4,459,051 + Pf6N2E2_3824 0.10 -2.0
4,459,051 + Pf6N2E2_3824 0.10 +0.4
4,459,051 + Pf6N2E2_3824 0.10 -0.6
4,459,052 - Pf6N2E2_3824 0.11 -1.2
4,459,052 - Pf6N2E2_3824 0.11 -0.6
4,459,052 - Pf6N2E2_3824 0.11 -1.7
4,459,052 - Pf6N2E2_3824 0.11 -0.6
4,459,052 - Pf6N2E2_3824 0.11 +0.4
4,459,055 + Pf6N2E2_3824 0.11 -1.2
4,459,055 + Pf6N2E2_3824 0.11 -0.6
4,459,055 + Pf6N2E2_3824 0.11 -0.6
4,459,055 + Pf6N2E2_3824 0.11 +0.4
4,459,055 + Pf6N2E2_3824 0.11 +0.4
4,459,055 + Pf6N2E2_3824 0.11 -0.6
4,459,055 + Pf6N2E2_3824 0.11 -2.4
4,459,055 + Pf6N2E2_3824 0.11 -0.6
4,459,056 - Pf6N2E2_3824 0.11 -0.6
4,459,056 - Pf6N2E2_3824 0.11 +0.4
4,459,056 - Pf6N2E2_3824 0.11 +0.4
4,459,056 - Pf6N2E2_3824 0.11 -0.6
4,459,119 + Pf6N2E2_3824 0.21 +0.4
4,459,119 + Pf6N2E2_3824 0.21 -0.6
4,459,119 + Pf6N2E2_3824 0.21 +0.4
4,459,120 - Pf6N2E2_3824 0.21 +0.4
4,459,120 - Pf6N2E2_3824 0.21 +0.4
4,459,120 - Pf6N2E2_3824 0.21 -0.4
4,459,120 - Pf6N2E2_3824 0.21 -0.6
4,459,420 - Pf6N2E2_3824 0.70 -0.8
4,459,477 + Pf6N2E2_3824 0.79 +0.4
4,459,477 + Pf6N2E2_3824 0.79 +0.4
4,459,478 - Pf6N2E2_3824 0.79 +0.4
4,459,631 - -0.6
4,459,631 - -0.6
4,459,633 - -0.3
4,459,796 - -1.3
4,459,806 + -0.6
4,459,806 + +0.4
4,459,843 + -0.6
4,459,844 - -0.6
4,459,844 - +2.4
4,459,844 - -0.6
4,459,844 - +0.4
4,459,873 - +0.4
4,459,883 + -0.6
4,459,883 + -0.6
4,459,883 + -2.2
4,459,884 - -0.6
4,459,884 - +0.4
4,459,951 + -0.6
4,460,143 + Pf6N2E2_3825 0.26 -1.2
4,460,144 - Pf6N2E2_3825 0.26 -4.1
4,460,221 - Pf6N2E2_3825 0.33 -0.6
4,460,372 - Pf6N2E2_3825 0.47 +0.4
4,460,372 - Pf6N2E2_3825 0.47 -2.4
4,460,542 + Pf6N2E2_3825 0.62 -0.6
4,460,542 + Pf6N2E2_3825 0.62 -0.6
4,460,543 - Pf6N2E2_3825 0.63 +0.4
4,460,955 - +0.4
4,461,228 + Pf6N2E2_3826 0.20 +0.4
4,461,250 - Pf6N2E2_3826 0.21 -1.2
4,461,250 - Pf6N2E2_3826 0.21 -1.2
4,461,733 - Pf6N2E2_3826 0.55 +0.4
4,461,869 + Pf6N2E2_3826 0.64 -1.6
4,461,870 - Pf6N2E2_3826 0.64 -1.6
4,461,870 - Pf6N2E2_3826 0.64 -1.2

Or see this region's nucleotide sequence