Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3697

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
4,311,726	-				-0.1
4,311,821	+		Pf6N2E2_3695	0.21	+0.4
4,312,056	+		Pf6N2E2_3695	0.79	+0.0
4,312,056	+		Pf6N2E2_3695	0.79	-0.5
4,312,056	+		Pf6N2E2_3695	0.79	-1.3
4,312,056	+		Pf6N2E2_3695	0.79	-0.6
4,312,057	-		Pf6N2E2_3695	0.80	-1.2
4,312,169	+				-0.8
4,312,170	-				+0.4
4,312,175	+				-0.6
4,312,175	+				-0.6
4,312,175	+				-0.6
4,312,175	+				+0.4
4,312,175	+				-0.6
4,312,175	+				-1.9
4,312,175	+				-0.6
4,312,175	+				-0.2
4,312,175	+				-0.6
4,312,176	-				+0.4
4,312,176	-				-0.6
4,312,176	-				-0.7
4,312,204	+				-1.2
4,312,238	+				-1.2
4,312,239	-				-0.6
4,312,259	-				+0.3
4,312,309	+				+0.4
4,312,310	-				-0.6
4,312,464	+		Pf6N2E2_3696	0.59	-0.6
4,312,600	+				+0.4
4,312,600	+				-0.2
4,312,600	+				+0.4
4,312,600	+				+0.4
4,312,600	+				-1.2
4,312,601	-				+0.4
4,312,601	-				+0.4
4,312,601	-				+1.0
4,312,601	-				-0.6
4,312,761	-				-1.2
4,313,015	-		Pf6N2E2_3697	0.35	-0.6
4,313,015	-		Pf6N2E2_3697	0.35	-0.6
4,313,085	+		Pf6N2E2_3697	0.43	-1.2
4,313,099	-		Pf6N2E2_3697	0.45	+0.1
4,313,129	+		Pf6N2E2_3697	0.48	+0.4
4,313,129	+		Pf6N2E2_3697	0.48	+0.4
4,313,129	+		Pf6N2E2_3697	0.48	-1.2
4,313,130	-		Pf6N2E2_3697	0.48	-0.5
4,313,130	-		Pf6N2E2_3697	0.48	-0.6
4,313,303	+		Pf6N2E2_3697	0.68	-0.6
4,313,303	+		Pf6N2E2_3697	0.68	-0.3
4,313,303	+		Pf6N2E2_3697	0.68	-0.6
4,313,304	-		Pf6N2E2_3697	0.69	+0.4
4,313,304	-		Pf6N2E2_3697	0.69	-1.2
4,313,419	+		Pf6N2E2_3697	0.82	+0.4
4,313,422	+		Pf6N2E2_3697	0.82	-0.6
4,313,423	-		Pf6N2E2_3697	0.82	+0.4
4,313,423	-		Pf6N2E2_3697	0.82	-1.9
4,313,590	+				+0.4
4,313,590	+				-1.2
4,313,591	-				-1.2
4,313,591	-				-0.2
4,313,593	+				+0.4
4,313,594	-				-1.1
4,313,594	-				+0.4
4,313,594	-				-1.2
4,313,807	+				-0.6
4,313,808	-				-1.6
4,313,808	-				-0.6
4,313,817	+				-0.6
4,313,817	+				-0.4
4,313,835	+				-0.6
4,313,835	+				-1.2
4,313,835	+				+0.4
4,313,836	-				+0.4
4,313,856	-				+0.4
4,313,856	-				-0.6
4,313,856	-				-1.2
4,313,968	-		Pf6N2E2_3698	0.23	+0.4
4,313,968	-		Pf6N2E2_3698	0.23	-0.9
4,314,063	+		Pf6N2E2_3698	0.38	+0.4
4,314,063	+		Pf6N2E2_3698	0.38	+0.4
4,314,063	+		Pf6N2E2_3698	0.38	-0.3
4,314,064	-		Pf6N2E2_3698	0.38	+0.4
4,314,423	+				-1.2
4,314,424	-				+0.4
4,314,517	+				-0.3
4,314,517	+				+0.4
4,314,517	+				-0.6
4,314,517	+				-0.3
4,314,517	+				+0.4
4,314,518	-				+0.4
4,314,518	-				+0.4
4,314,518	-				-1.1
4,314,518	-				-0.6
4,314,518	-				+0.4
4,314,518	-				-0.6
4,314,518	-				-0.5
4,314,518	-				-0.6
4,314,519	+				-0.6
4,314,519	+				+0.4
4,314,520	-				+0.4
4,314,520	-				+0.4
4,314,520	-				+0.4
4,314,521	+				-0.6
4,314,521	+				+0.4
4,314,521	+				-1.2
4,314,521	+				-0.9
4,314,521	+				-0.2
4,314,521	+				-0.6
4,314,521	+				-1.2
4,314,521	+				-1.6
4,314,521	+				-0.6
4,314,521	+				-0.6
4,314,521	+				-0.8
4,314,521	+				-0.3
4,314,521	+				+0.4
4,314,522	-				-0.3
4,314,522	-				-0.6
4,314,522	-				-0.2
4,314,522	-				-0.6
4,314,522	-				-0.6
4,314,522	-				-0.6
4,314,522	-				-0.7
4,314,522	-				-1.2
4,314,522	-				-0.2
4,314,522	-				-0.8
4,314,522	-				+0.4
4,314,522	-				-0.6