Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3672

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3671 and Pf6N2E2_3672 are separated by 187 nucleotidesPf6N2E2_3672 and Pf6N2E2_3673 are separated by 268 nucleotidesPf6N2E2_3673 and Pf6N2E2_3674 overlap by 6 nucleotides Pf6N2E2_3671 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 4,273,318 to 4,274,352 _3671 Pf6N2E2_3672 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 4,274,540 to 4,277,491 _3672 Pf6N2E2_3673 - hypothetical protein, at 4,277,760 to 4,277,879 _3673 Pf6N2E2_3674 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 4,277,874 to 4,280,519 _3674 Position (kb) 4274 4275 4276 4277 4278Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4273.908 kb on - strand, within Pf6N2E2_3671at 4274.355 kb on - strandat 4274.355 kb on - strandat 4274.383 kb on - strandat 4274.439 kb on - strandat 4274.439 kb on - strandat 4274.439 kb on - strandat 4274.439 kb on - strandat 4274.439 kb on - strandat 4274.535 kb on - strandat 4274.535 kb on - strandat 4274.668 kb on - strandat 4274.668 kb on - strandat 4274.668 kb on - strandat 4274.668 kb on - strandat 4275.168 kb on + strand, within Pf6N2E2_3672at 4275.168 kb on + strand, within Pf6N2E2_3672at 4275.168 kb on + strand, within Pf6N2E2_3672at 4275.168 kb on + strand, within Pf6N2E2_3672at 4275.169 kb on - strand, within Pf6N2E2_3672at 4275.169 kb on - strand, within Pf6N2E2_3672at 4275.169 kb on - strand, within Pf6N2E2_3672at 4275.361 kb on + strand, within Pf6N2E2_3672at 4275.362 kb on - strandat 4275.483 kb on + strand, within Pf6N2E2_3672at 4275.483 kb on + strand, within Pf6N2E2_3672at 4275.483 kb on + strand, within Pf6N2E2_3672at 4275.796 kb on - strand, within Pf6N2E2_3672at 4275.796 kb on - strand, within Pf6N2E2_3672at 4276.159 kb on - strand, within Pf6N2E2_3672at 4276.159 kb on - strand, within Pf6N2E2_3672at 4276.159 kb on - strand, within Pf6N2E2_3672at 4276.289 kb on - strand, within Pf6N2E2_3672at 4276.289 kb on - strand, within Pf6N2E2_3672at 4276.290 kb on + strand, within Pf6N2E2_3672at 4276.290 kb on + strand, within Pf6N2E2_3672at 4276.291 kb on - strand, within Pf6N2E2_3672at 4276.306 kb on - strand, within Pf6N2E2_3672at 4276.344 kb on + strand, within Pf6N2E2_3672at 4276.344 kb on + strand, within Pf6N2E2_3672at 4276.576 kb on - strand, within Pf6N2E2_3672at 4276.686 kb on + strand, within Pf6N2E2_3672at 4276.687 kb on - strand, within Pf6N2E2_3672at 4276.687 kb on - strand, within Pf6N2E2_3672at 4276.689 kb on + strand, within Pf6N2E2_3672at 4276.689 kb on + strand, within Pf6N2E2_3672at 4276.690 kb on - strand, within Pf6N2E2_3672at 4276.690 kb on - strand, within Pf6N2E2_3672at 4276.690 kb on - strand, within Pf6N2E2_3672at 4276.690 kb on - strand, within Pf6N2E2_3672at 4277.022 kb on + strand, within Pf6N2E2_3672at 4277.022 kb on + strand, within Pf6N2E2_3672at 4277.023 kb on - strand, within Pf6N2E2_3672at 4277.023 kb on - strand, within Pf6N2E2_3672at 4277.023 kb on - strand, within Pf6N2E2_3672at 4277.023 kb on - strand, within Pf6N2E2_3672at 4277.034 kb on + strand, within Pf6N2E2_3672at 4277.240 kb on - strandat 4277.279 kb on + strandat 4277.330 kb on - strandat 4277.527 kb on + strandat 4277.543 kb on + strandat 4277.544 kb on - strandat 4277.549 kb on - strandat 4277.549 kb on - strandat 4277.717 kb on + strandat 4277.719 kb on + strandat 4277.719 kb on + strandat 4277.761 kb on + strandat 4278.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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4,273,908 - Pf6N2E2_3671 0.57 +0.4
4,274,355 - -1.3
4,274,355 - -1.2
4,274,383 - -0.2
4,274,439 - +0.4
4,274,439 - +0.4
4,274,439 - +0.4
4,274,439 - +0.4
4,274,439 - -0.0
4,274,535 - +0.4
4,274,535 - +2.0
4,274,668 - -0.6
4,274,668 - -0.6
4,274,668 - +0.4
4,274,668 - -0.6
4,275,168 + Pf6N2E2_3672 0.21 +0.4
4,275,168 + Pf6N2E2_3672 0.21 -2.9
4,275,168 + Pf6N2E2_3672 0.21 +0.4
4,275,168 + Pf6N2E2_3672 0.21 +0.4
4,275,169 - Pf6N2E2_3672 0.21 -1.9
4,275,169 - Pf6N2E2_3672 0.21 -3.0
4,275,169 - Pf6N2E2_3672 0.21 -1.0
4,275,361 + Pf6N2E2_3672 0.28 +0.4
4,275,362 - +0.4
4,275,483 + Pf6N2E2_3672 0.32 -1.2
4,275,483 + Pf6N2E2_3672 0.32 +0.4
4,275,483 + Pf6N2E2_3672 0.32 -2.0
4,275,796 - Pf6N2E2_3672 0.43 -4.5
4,275,796 - Pf6N2E2_3672 0.43 -1.6
4,276,159 - Pf6N2E2_3672 0.55 -3.8
4,276,159 - Pf6N2E2_3672 0.55 -1.9
4,276,159 - Pf6N2E2_3672 0.55 +0.4
4,276,289 - Pf6N2E2_3672 0.59 -3.2
4,276,289 - Pf6N2E2_3672 0.59 +0.4
4,276,290 + Pf6N2E2_3672 0.59 -1.6
4,276,290 + Pf6N2E2_3672 0.59 +0.4
4,276,291 - Pf6N2E2_3672 0.59 -2.5
4,276,306 - Pf6N2E2_3672 0.60 -3.0
4,276,344 + Pf6N2E2_3672 0.61 -0.6
4,276,344 + Pf6N2E2_3672 0.61 -0.6
4,276,576 - Pf6N2E2_3672 0.69 +0.4
4,276,686 + Pf6N2E2_3672 0.73 -0.6
4,276,687 - Pf6N2E2_3672 0.73 +0.4
4,276,687 - Pf6N2E2_3672 0.73 -2.8
4,276,689 + Pf6N2E2_3672 0.73 -0.9
4,276,689 + Pf6N2E2_3672 0.73 -0.6
4,276,690 - Pf6N2E2_3672 0.73 -2.7
4,276,690 - Pf6N2E2_3672 0.73 -2.9
4,276,690 - Pf6N2E2_3672 0.73 -0.6
4,276,690 - Pf6N2E2_3672 0.73 -1.2
4,277,022 + Pf6N2E2_3672 0.84 -2.4
4,277,022 + Pf6N2E2_3672 0.84 -3.2
4,277,023 - Pf6N2E2_3672 0.84 +0.4
4,277,023 - Pf6N2E2_3672 0.84 -0.6
4,277,023 - Pf6N2E2_3672 0.84 -1.2
4,277,023 - Pf6N2E2_3672 0.84 +0.4
4,277,034 + Pf6N2E2_3672 0.84 +0.4
4,277,240 - -3.3
4,277,279 + -1.2
4,277,330 - -3.3
4,277,527 + -0.6
4,277,543 + -0.4
4,277,544 - -4.8
4,277,549 - -4.4
4,277,549 - -4.5
4,277,717 + -0.6
4,277,719 + +0.4
4,277,719 + -0.6
4,277,761 + -0.6
4,278,225 + -4.0

Or see this region's nucleotide sequence