Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3639 and Pf6N2E2_3640 are separated by 102 nucleotides Pf6N2E2_3640 and Pf6N2E2_3641 overlap by 10 nucleotides Pf6N2E2_3641 and Pf6N2E2_3642 are separated by 214 nucleotides
Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911
_3639
Pf6N2E2_3640 - FIG074102: hypothetical protein, at 4,240,014 to 4,240,466
_3640
Pf6N2E2_3641 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,240,457 to 4,241,074
_3641
Pf6N2E2_3642 - lipoprotein, putative, at 4,241,289 to 4,242,035
_3642
Position (kb) 4240
4241 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.036 kb on - strand at 4239.036 kb on - strand at 4239.057 kb on + strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.061 kb on + strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.105 kb on - strand at 4239.879 kb on + strand at 4239.879 kb on + strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4240.001 kb on - strand at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.195 kb on + strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.270 kb on + strand, within Pf6N2E2_3640 at 4240.393 kb on + strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.466 kb on + strand at 4240.592 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641 at 4241.101 kb on + strand at 4241.101 kb on + strand at 4241.102 kb on - strand at 4241.102 kb on - strand at 4241.102 kb on - strand at 4241.204 kb on + strand at 4241.204 kb on + strand at 4241.205 kb on - strand at 4241.205 kb on - strand at 4241.205 kb on - strand at 4241.213 kb on + strand at 4241.213 kb on + strand at 4241.214 kb on - strand at 4241.367 kb on + strand, within Pf6N2E2_3642
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 4,239,032 - +0.4 4,239,032 - -0.2 4,239,032 - +0.4 4,239,032 - -0.6 4,239,036 - -0.2 4,239,036 - -0.6 4,239,057 + +0.4 4,239,058 - +0.4 4,239,058 - -0.1 4,239,058 - +0.4 4,239,058 - -1.6 4,239,058 - +0.4 4,239,058 - +0.4 4,239,058 - +0.4 4,239,058 - +0.3 4,239,061 + -0.6 4,239,062 - -0.6 4,239,062 - -0.8 4,239,062 - -1.6 4,239,062 - +0.4 4,239,095 - -0.6 4,239,095 - +1.4 4,239,095 - -0.6 4,239,105 - -1.0 4,239,879 + -1.2 4,239,879 + +0.4 4,239,880 - +0.4 4,239,880 - -0.6 4,239,880 - -0.6 4,239,880 - +0.4 4,239,937 + +0.4 4,239,937 + -0.7 4,239,937 + -1.9 4,239,937 + -1.2 4,239,938 - +0.4 4,239,938 - -1.0 4,239,938 - -0.6 4,239,938 - +0.4 4,239,938 - -1.6 4,240,001 - +0.4 4,240,132 + Pf6N2E2_3640 0.26 -1.6 4,240,132 + Pf6N2E2_3640 0.26 -0.6 4,240,132 + Pf6N2E2_3640 0.26 +0.4 4,240,132 + Pf6N2E2_3640 0.26 -1.2 4,240,132 + Pf6N2E2_3640 0.26 +0.4 4,240,132 + Pf6N2E2_3640 0.26 +0.4 4,240,132 + Pf6N2E2_3640 0.26 +0.4 4,240,133 - Pf6N2E2_3640 0.26 +0.4 4,240,133 - Pf6N2E2_3640 0.26 -0.6 4,240,133 - Pf6N2E2_3640 0.26 -2.5 4,240,133 - Pf6N2E2_3640 0.26 -1.2 4,240,133 - Pf6N2E2_3640 0.26 +0.4 4,240,133 - Pf6N2E2_3640 0.26 -0.6 4,240,195 + Pf6N2E2_3640 0.40 +0.4 4,240,196 - Pf6N2E2_3640 0.40 +0.4 4,240,196 - Pf6N2E2_3640 0.40 -0.6 4,240,196 - Pf6N2E2_3640 0.40 -2.8 4,240,270 + Pf6N2E2_3640 0.57 -0.6 4,240,393 + Pf6N2E2_3640 0.84 -1.2 4,240,394 - Pf6N2E2_3640 0.84 -1.8 4,240,394 - Pf6N2E2_3640 0.84 +0.4 4,240,466 + +0.4 4,240,592 - Pf6N2E2_3641 0.22 -0.6 4,240,699 - Pf6N2E2_3641 0.39 -0.2 4,240,699 - Pf6N2E2_3641 0.39 +0.4 4,241,101 + +0.4 4,241,101 + -2.2 4,241,102 - -1.6 4,241,102 - +0.4 4,241,102 - -0.6 4,241,204 + +0.4 4,241,204 + -0.6 4,241,205 - +0.4 4,241,205 - +0.2 4,241,205 - +0.4 4,241,213 + -0.9 4,241,213 + -1.2 4,241,214 - +0.4 4,241,367 + Pf6N2E2_3642 0.10 +0.4
Or see this region's nucleotide sequence