Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3566 and Pf6N2E2_3567 are separated by 376 nucleotides Pf6N2E2_3567 and Pf6N2E2_3568 are separated by 158 nucleotides
Pf6N2E2_3566 - exported protein, conserved, at 4,156,885 to 4,158,960
_3566
Pf6N2E2_3567 - FIG00963947: hypothetical protein, at 4,159,337 to 4,159,753
_3567
Pf6N2E2_3568 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 4,159,912 to 4,160,544
_3568
Position (kb) 4159
4160 Strain fitness (log2 ratio) -2
-1
0
1 at 4158.416 kb on + strand, within Pf6N2E2_3566 at 4158.417 kb on - strand, within Pf6N2E2_3566 at 4158.417 kb on - strand, within Pf6N2E2_3566 at 4158.417 kb on - strand, within Pf6N2E2_3566 at 4158.417 kb on - strand, within Pf6N2E2_3566 at 4158.417 kb on - strand, within Pf6N2E2_3566 at 4158.649 kb on + strand, within Pf6N2E2_3566 at 4158.649 kb on + strand, within Pf6N2E2_3566 at 4158.649 kb on + strand, within Pf6N2E2_3566 at 4159.036 kb on + strand at 4159.037 kb on - strand at 4159.098 kb on + strand at 4159.143 kb on + strand at 4159.144 kb on - strand at 4159.144 kb on - strand at 4159.144 kb on - strand at 4159.144 kb on - strand at 4159.144 kb on - strand at 4159.144 kb on - strand at 4159.167 kb on + strand at 4159.168 kb on - strand at 4159.168 kb on - strand at 4159.210 kb on - strand at 4159.245 kb on - strand at 4159.247 kb on + strand at 4159.248 kb on - strand at 4159.248 kb on - strand at 4159.269 kb on + strand at 4159.270 kb on - strand at 4159.288 kb on + strand at 4159.289 kb on - strand at 4159.289 kb on - strand at 4159.289 kb on - strand at 4159.350 kb on + strand at 4159.350 kb on + strand at 4159.350 kb on + strand at 4159.351 kb on - strand at 4159.418 kb on - strand, within Pf6N2E2_3567 at 4159.448 kb on + strand, within Pf6N2E2_3567 at 4159.449 kb on - strand, within Pf6N2E2_3567 at 4159.514 kb on + strand, within Pf6N2E2_3567 at 4159.684 kb on + strand, within Pf6N2E2_3567 at 4159.685 kb on - strand, within Pf6N2E2_3567 at 4159.872 kb on + strand at 4159.872 kb on + strand at 4159.873 kb on - strand at 4159.873 kb on - strand at 4159.873 kb on - strand at 4159.873 kb on - strand at 4160.057 kb on - strand, within Pf6N2E2_3568 at 4160.142 kb on - strand, within Pf6N2E2_3568 at 4160.172 kb on + strand, within Pf6N2E2_3568 at 4160.172 kb on + strand, within Pf6N2E2_3568 at 4160.553 kb on + strand at 4160.553 kb on + strand at 4160.553 kb on + strand at 4160.746 kb on + strand at 4160.746 kb on + strand at 4160.746 kb on + strand at 4160.746 kb on + strand at 4160.747 kb on - strand at 4160.747 kb on - strand at 4160.747 kb on - strand at 4160.747 kb on - strand at 4160.747 kb on - strand at 4160.747 kb on - strand at 4160.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 4,158,416 + Pf6N2E2_3566 0.74 +0.4 4,158,417 - Pf6N2E2_3566 0.74 +0.4 4,158,417 - Pf6N2E2_3566 0.74 -0.5 4,158,417 - Pf6N2E2_3566 0.74 +0.4 4,158,417 - Pf6N2E2_3566 0.74 -0.6 4,158,417 - Pf6N2E2_3566 0.74 +0.4 4,158,649 + Pf6N2E2_3566 0.85 -0.1 4,158,649 + Pf6N2E2_3566 0.85 +1.0 4,158,649 + Pf6N2E2_3566 0.85 -1.6 4,159,036 + -0.6 4,159,037 - +0.4 4,159,098 + +0.4 4,159,143 + -0.4 4,159,144 - -1.2 4,159,144 - +0.4 4,159,144 - -0.6 4,159,144 - +0.4 4,159,144 - -0.2 4,159,144 - +0.4 4,159,167 + +0.4 4,159,168 - +0.4 4,159,168 - -0.9 4,159,210 - +0.4 4,159,245 - +0.4 4,159,247 + +0.4 4,159,248 - +0.4 4,159,248 - +0.4 4,159,269 + +0.4 4,159,270 - +0.4 4,159,288 + +0.4 4,159,289 - -0.6 4,159,289 - -0.6 4,159,289 - -1.2 4,159,350 + +0.4 4,159,350 + +0.4 4,159,350 + +0.1 4,159,351 - -0.6 4,159,418 - Pf6N2E2_3567 0.19 +0.8 4,159,448 + Pf6N2E2_3567 0.27 -0.7 4,159,449 - Pf6N2E2_3567 0.27 +0.4 4,159,514 + Pf6N2E2_3567 0.42 +0.4 4,159,684 + Pf6N2E2_3567 0.83 +0.4 4,159,685 - Pf6N2E2_3567 0.83 -0.3 4,159,872 + -0.6 4,159,872 + -1.2 4,159,873 - +0.4 4,159,873 - -1.2 4,159,873 - +0.4 4,159,873 - +0.4 4,160,057 - Pf6N2E2_3568 0.23 -0.6 4,160,142 - Pf6N2E2_3568 0.36 -1.2 4,160,172 + Pf6N2E2_3568 0.41 +0.4 4,160,172 + Pf6N2E2_3568 0.41 -0.6 4,160,553 + -0.6 4,160,553 + -0.1 4,160,553 + +0.4 4,160,746 + -0.6 4,160,746 + -2.2 4,160,746 + -1.9 4,160,746 + -1.2 4,160,747 - -0.6 4,160,747 - +0.4 4,160,747 - +0.4 4,160,747 - -1.9 4,160,747 - -0.8 4,160,747 - -0.5 4,160,747 - -1.2
Or see this region's nucleotide sequence