Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3287 and Pf6N2E2_3288 are separated by 372 nucleotides Pf6N2E2_3288 and Pf6N2E2_3289 are separated by 16 nucleotides Pf6N2E2_3289 and Pf6N2E2_3290 are separated by 10 nucleotides
Pf6N2E2_3287 - Rod shape-determining protein MreB, at 3,793,619 to 3,794,656
_3287
Pf6N2E2_3288 - Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7), at 3,795,029 to 3,795,316
_3288
Pf6N2E2_3289 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 3,795,333 to 3,796,784
_3289
Pf6N2E2_3290 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 3,796,795 to 3,798,240
_3290
Position (kb)
3795
3796
3797 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3794.801 kb on + strand at 3794.801 kb on + strand at 3794.801 kb on + strand at 3794.904 kb on + strand at 3794.904 kb on + strand at 3794.936 kb on + strand at 3794.936 kb on + strand at 3794.946 kb on + strand at 3794.946 kb on + strand at 3794.954 kb on + strand at 3794.954 kb on + strand at 3794.981 kb on + strand at 3794.981 kb on + strand at 3794.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 3,794,801 + +0.4 3,794,801 + -3.0 3,794,801 + +0.4 3,794,904 + -0.6 3,794,904 + -1.1 3,794,936 + -0.6 3,794,936 + -1.3 3,794,946 + -0.6 3,794,946 + -1.2 3,794,954 + +0.4 3,794,954 + +0.4 3,794,981 + -0.6 3,794,981 + -1.2 3,794,981 + +0.4
Or see this region's nucleotide sequence