Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1316

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,548,770	+		Pf6N2E2_1314	0.84	+0.1
1,548,770	+		Pf6N2E2_1314	0.84	+0.1
1,548,770	+		Pf6N2E2_1314	0.84	+0.1
1,548,771	-		Pf6N2E2_1314	0.84	-0.5
1,548,811	+		Pf6N2E2_1314	0.89	+0.1
1,548,891	-				+0.1
1,549,104	-		Pf6N2E2_1315	0.15	+0.1
1,549,125	+		Pf6N2E2_1315	0.20	-0.5
1,549,497	+				+0.1
1,549,508	+				+0.1
1,549,702	+				-1.9
1,549,703	-				-0.3
1,549,859	+		Pf6N2E2_1316	0.15	-0.9
1,550,046	+		Pf6N2E2_1316	0.35	-1.9
1,550,046	+		Pf6N2E2_1316	0.35	-0.9
1,550,047	-		Pf6N2E2_1316	0.35	-0.9
1,550,047	-		Pf6N2E2_1316	0.35	-0.9
1,550,059	-		Pf6N2E2_1316	0.37	-2.4
1,550,059	-		Pf6N2E2_1316	0.37	-1.5
1,550,085	+		Pf6N2E2_1316	0.39	-1.9
1,550,085	+		Pf6N2E2_1316	0.39	+0.1
1,550,599	+				+0.1
1,550,600	-				+0.1
1,550,693	+				+0.1
1,550,693	+				-0.9
1,550,701	+				-0.3
1,550,707	+				-0.7
1,550,790	+				+0.1
1,550,799	+				-1.5
1,550,800	-				+0.1
1,550,925	+		Pf6N2E2_1317	0.17	+0.1
1,550,925	+		Pf6N2E2_1317	0.17	-0.9
1,550,926	-		Pf6N2E2_1317	0.17	+0.1
1,550,988	+		Pf6N2E2_1317	0.23	+0.1
1,551,199	-		Pf6N2E2_1317	0.41	+0.1
1,551,199	-		Pf6N2E2_1317	0.41	+0.1
1,551,411	+		Pf6N2E2_1317	0.59	+0.1