Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_942

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,108,173	+				+0.3
1,108,173	+				-1.7
1,108,209	+				-0.7
1,108,209	+				-0.7
1,108,210	-				+0.3
1,108,247	+				-0.5
1,108,289	+				+0.3
1,108,290	-				-0.1
1,108,418	+		Pf6N2E2_941	0.20	+0.3
1,108,419	-		Pf6N2E2_941	0.20	+0.3
1,108,419	-		Pf6N2E2_941	0.20	+0.3
1,108,419	-		Pf6N2E2_941	0.20	-0.7
1,108,419	-		Pf6N2E2_941	0.20	-0.7
1,108,435	-		Pf6N2E2_941	0.22	+0.3
1,108,479	-		Pf6N2E2_941	0.29	+0.3
1,108,479	-		Pf6N2E2_941	0.29	-1.0
1,108,631	+		Pf6N2E2_941	0.53	-0.1
1,108,714	+		Pf6N2E2_941	0.67	+0.3
1,108,766	-		Pf6N2E2_941	0.75	-1.3
1,108,766	-		Pf6N2E2_941	0.75	+0.3
1,108,812	-		Pf6N2E2_941	0.82	-0.6
1,108,812	-		Pf6N2E2_941	0.82	-1.2
1,108,888	+				+0.3
1,108,888	+				+0.3
1,108,888	+				+0.3
1,108,888	+				+0.3
1,108,888	+				+0.3
1,108,888	+				+0.3
1,108,889	-				-2.3
1,108,889	-				+0.3
1,108,941	-				+0.3
1,108,963	-				+0.3
1,109,046	+				+0.3
1,109,046	+				-0.9
1,109,046	+				+0.3
1,109,047	-				-0.7
1,109,059	-				-1.3
1,109,158	+				-1.3
1,109,159	-				+0.3
1,109,159	-				-1.7
1,109,164	+				-1.3
1,109,164	+				-0.7
1,109,538	-		Pf6N2E2_942	0.84	-1.7
1,109,538	-		Pf6N2E2_942	0.84	-0.7
1,109,628	+				-0.3
1,109,777	+				-0.6
1,109,777	+				+0.3
1,109,777	+				-0.6
1,109,778	-				-0.7
1,109,848	+				-1.7
1,109,848	+				+0.3
1,109,849	-				+0.3
1,109,943	+		Pf6N2E2_943	0.11	+0.3
1,109,943	+		Pf6N2E2_943	0.11	-0.0
1,109,944	-		Pf6N2E2_943	0.11	-0.7
1,109,977	-		Pf6N2E2_943	0.14	-1.3
1,110,011	+		Pf6N2E2_943	0.17	+0.3
1,110,119	-		Pf6N2E2_943	0.28	+0.3
1,110,126	+		Pf6N2E2_943	0.28	-0.1
1,110,127	-		Pf6N2E2_943	0.29	+0.3
1,110,473	+		Pf6N2E2_943	0.62	-0.6
1,110,474	-		Pf6N2E2_943	0.62	-0.7