Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_91

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_90 and Pf6N2E2_91 are separated by 141 nucleotidesPf6N2E2_91 and Pf6N2E2_92 are separated by 106 nucleotides Pf6N2E2_90 - Lipoprotein, putative, at 135,485 to 136,639 _90 Pf6N2E2_91 - Transcriptional regulator, LysR family, at 136,781 to 137,665 _91 Pf6N2E2_92 - hypothetical protein, at 137,772 to 138,221 _92 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1at 135.940 kb on - strand, within Pf6N2E2_90at 136.015 kb on + strand, within Pf6N2E2_90at 136.264 kb on + strand, within Pf6N2E2_90at 136.352 kb on + strand, within Pf6N2E2_90at 136.352 kb on + strand, within Pf6N2E2_90at 136.369 kb on + strand, within Pf6N2E2_90at 136.397 kb on + strand, within Pf6N2E2_90at 136.547 kb on - strandat 136.567 kb on + strandat 136.568 kb on - strandat 136.613 kb on + strandat 136.613 kb on + strandat 136.679 kb on + strandat 136.679 kb on + strandat 136.679 kb on + strandat 136.679 kb on + strandat 136.680 kb on - strandat 136.680 kb on - strandat 136.865 kb on - strandat 136.865 kb on - strandat 136.866 kb on + strandat 137.163 kb on + strand, within Pf6N2E2_91at 137.164 kb on - strand, within Pf6N2E2_91at 137.285 kb on - strand, within Pf6N2E2_91at 137.448 kb on + strand, within Pf6N2E2_91at 137.448 kb on + strand, within Pf6N2E2_91at 137.449 kb on - strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.454 kb on + strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.455 kb on - strand, within Pf6N2E2_91at 137.679 kb on - strandat 137.703 kb on + strandat 137.780 kb on + strandat 137.780 kb on + strandat 137.861 kb on - strand, within Pf6N2E2_92at 138.001 kb on + strand, within Pf6N2E2_92at 138.002 kb on - strand, within Pf6N2E2_92at 138.115 kb on + strand, within Pf6N2E2_92at 138.116 kb on - strand, within Pf6N2E2_92at 138.325 kb on + strandat 138.575 kb on + strandat 138.576 kb on - strandat 138.576 kb on - strandat 138.614 kb on + strandat 138.614 kb on + strandat 138.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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135,940 - Pf6N2E2_90 0.39 -1.2
136,015 + Pf6N2E2_90 0.46 +0.3
136,264 + Pf6N2E2_90 0.67 -0.2
136,352 + Pf6N2E2_90 0.75 -0.2
136,352 + Pf6N2E2_90 0.75 -0.7
136,369 + Pf6N2E2_90 0.77 +0.3
136,397 + Pf6N2E2_90 0.79 -0.7
136,547 - +0.3
136,567 + +0.3
136,568 - -0.7
136,613 + +0.3
136,613 + -1.2
136,679 + +0.3
136,679 + +0.3
136,679 + +0.3
136,679 + -0.7
136,680 - -0.7
136,680 - +0.3
136,865 - +0.3
136,865 - +0.3
136,866 + +0.3
137,163 + Pf6N2E2_91 0.43 -0.7
137,164 - Pf6N2E2_91 0.43 -0.7
137,285 - Pf6N2E2_91 0.57 -0.7
137,448 + Pf6N2E2_91 0.75 +0.3
137,448 + Pf6N2E2_91 0.75 -1.0
137,449 - Pf6N2E2_91 0.75 -0.7
137,454 + Pf6N2E2_91 0.76 +1.0
137,454 + Pf6N2E2_91 0.76 +0.3
137,454 + Pf6N2E2_91 0.76 +0.3
137,454 + Pf6N2E2_91 0.76 +0.3
137,454 + Pf6N2E2_91 0.76 -0.3
137,454 + Pf6N2E2_91 0.76 +0.3
137,454 + Pf6N2E2_91 0.76 -0.1
137,454 + Pf6N2E2_91 0.76 +0.2
137,454 + Pf6N2E2_91 0.76 -0.7
137,455 - Pf6N2E2_91 0.76 -0.7
137,455 - Pf6N2E2_91 0.76 +0.3
137,455 - Pf6N2E2_91 0.76 +0.3
137,455 - Pf6N2E2_91 0.76 -0.1
137,455 - Pf6N2E2_91 0.76 +0.1
137,455 - Pf6N2E2_91 0.76 +0.3
137,455 - Pf6N2E2_91 0.76 -1.8
137,455 - Pf6N2E2_91 0.76 +0.3
137,455 - Pf6N2E2_91 0.76 +0.3
137,679 - +0.3
137,703 + -1.7
137,780 + -0.4
137,780 + +0.3
137,861 - Pf6N2E2_92 0.20 +0.3
138,001 + Pf6N2E2_92 0.51 +0.3
138,002 - Pf6N2E2_92 0.51 -0.7
138,115 + Pf6N2E2_92 0.76 +0.3
138,116 - Pf6N2E2_92 0.76 +0.3
138,325 + -0.7
138,575 + +0.3
138,576 - +0.3
138,576 - -0.4
138,614 + +0.3
138,614 + -0.1
138,615 - -0.1

Or see this region's nucleotide sequence