Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_604 and Pf6N2E2_605 are separated by 403 nucleotides Pf6N2E2_605 and Pf6N2E2_606 are separated by 43 nucleotides
Pf6N2E2_604 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 678,116 to 680,773
_604
Pf6N2E2_605 - FIG002465: BNR repeat protein, at 681,177 to 682,214
_605
Pf6N2E2_606 - FIG005548: transport protein, at 682,258 to 684,633
_606
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1 at 680.771 kb on + strand at 680.772 kb on - strand at 680.949 kb on + strand at 680.949 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.988 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.037 kb on - strand at 681.054 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.110 kb on - strand at 681.136 kb on + strand at 681.137 kb on - strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.145 kb on + strand at 681.145 kb on + strand at 681.146 kb on - strand at 681.146 kb on - strand at 681.161 kb on + strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.310 kb on - strand, within Pf6N2E2_605 at 681.409 kb on - strand, within Pf6N2E2_605 at 681.897 kb on + strand, within Pf6N2E2_605 at 681.898 kb on - strand, within Pf6N2E2_605 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.678 kb on + strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.681 kb on - strand, within Pf6N2E2_606
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 680,771 + -1.3 680,772 - +0.3 680,949 + -0.7 680,949 + +0.3 680,964 + -1.1 680,964 + -0.7 680,964 + +0.3 680,965 - -0.5 680,965 - -0.5 680,965 - +0.7 680,965 - +0.3 680,965 - -1.3 680,988 + -0.5 681,031 + -1.3 681,031 + -1.1 681,031 + +0.3 681,031 + -0.6 681,037 - -0.7 681,054 + -1.3 681,074 + +0.3 681,074 + -1.1 681,074 + +0.3 681,074 + +0.3 681,075 - +0.3 681,075 - +0.3 681,075 - +0.3 681,110 - +0.0 681,136 + -0.7 681,137 - +0.3 681,142 + -0.7 681,142 + +0.3 681,142 + -1.3 681,142 + -0.7 681,143 - -1.3 681,143 - -1.3 681,143 - +0.3 681,143 - -0.7 681,143 - -1.3 681,145 + -0.7 681,145 + -1.7 681,146 - -1.7 681,146 - +0.3 681,161 + -0.7 681,162 - +0.3 681,162 - -0.7 681,162 - -0.7 681,162 - +0.3 681,310 - Pf6N2E2_605 0.13 -1.3 681,409 - Pf6N2E2_605 0.22 +0.3 681,897 + Pf6N2E2_605 0.69 -1.5 681,898 - Pf6N2E2_605 0.69 -1.7 682,528 + Pf6N2E2_606 0.11 +0.3 682,528 + Pf6N2E2_606 0.11 -0.7 682,528 + Pf6N2E2_606 0.11 -0.4 682,528 + Pf6N2E2_606 0.11 +0.3 682,528 + Pf6N2E2_606 0.11 +0.3 682,529 - Pf6N2E2_606 0.11 -1.2 682,529 - Pf6N2E2_606 0.11 -1.3 682,529 - Pf6N2E2_606 0.11 +0.3 682,529 - Pf6N2E2_606 0.11 +0.3 682,567 + Pf6N2E2_606 0.13 -0.7 682,567 + +0.3 682,567 + Pf6N2E2_606 0.13 +0.3 682,567 + Pf6N2E2_606 0.13 +0.3 682,567 + Pf6N2E2_606 0.13 +0.3 682,567 + Pf6N2E2_606 0.13 -0.1 682,568 - Pf6N2E2_606 0.13 +0.3 682,568 - Pf6N2E2_606 0.13 +0.3 682,568 - Pf6N2E2_606 0.13 -0.7 682,568 - Pf6N2E2_606 0.13 -0.7 682,568 - Pf6N2E2_606 0.13 +0.3 682,678 + Pf6N2E2_606 0.18 +0.3 682,679 - Pf6N2E2_606 0.18 +0.3 682,679 - Pf6N2E2_606 0.18 +0.3 682,679 - Pf6N2E2_606 0.18 +0.3 682,679 - Pf6N2E2_606 0.18 +0.3 682,681 - Pf6N2E2_606 0.18 +0.3
Or see this region's nucleotide sequence