Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5857

Experiment: Ying_AminoAcid20 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5856 and Pf6N2E2_5857 are separated by 113 nucleotidesPf6N2E2_5857 and Pf6N2E2_5858 are separated by 196 nucleotides Pf6N2E2_5856 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 6,674,637 to 6,675,860 _5856 Pf6N2E2_5857 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 6,675,974 to 6,677,419 _5857 Pf6N2E2_5858 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 6,677,616 to 6,678,782 _5858 Position (kb) 6675 6676 6677 6678Strain fitness (log2 ratio) -1 0 1at 6677.417 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
remove
6,677,417 + +0.4

Or see this region's nucleotide sequence