Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5746

Experiment: Ying_AminoAcid20 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5744 and Pf6N2E2_5745 overlap by 4 nucleotidesPf6N2E2_5745 and Pf6N2E2_5746 overlap by 4 nucleotidesPf6N2E2_5746 and Pf6N2E2_5747 are separated by 43 nucleotidesPf6N2E2_5747 and Pf6N2E2_5748 are separated by 187 nucleotides Pf6N2E2_5744 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 6,560,726 to 6,561,781 _5744 Pf6N2E2_5745 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 6,561,778 to 6,562,353 _5745 Pf6N2E2_5746 - Cobalamin synthase, at 6,562,350 to 6,563,081 _5746 Pf6N2E2_5747 - Two-component response regulator, at 6,563,125 to 6,563,730 _5747 Pf6N2E2_5748 - Transcriptional activator protein LuxR, at 6,563,918 to 6,564,193 _5748 Position (kb) 6562 6563 6564Strain fitness (log2 ratio) -3 -2 -1 0 1at 6561.474 kb on - strand, within Pf6N2E2_5744at 6561.897 kb on - strand, within Pf6N2E2_5745at 6561.897 kb on - strand, within Pf6N2E2_5745at 6561.897 kb on - strand, within Pf6N2E2_5745at 6561.924 kb on + strand, within Pf6N2E2_5745at 6561.925 kb on - strand, within Pf6N2E2_5745at 6562.016 kb on + strand, within Pf6N2E2_5745at 6562.016 kb on + strand, within Pf6N2E2_5745at 6562.017 kb on - strand, within Pf6N2E2_5745at 6562.079 kb on + strand, within Pf6N2E2_5745at 6562.079 kb on + strand, within Pf6N2E2_5745at 6562.103 kb on - strand, within Pf6N2E2_5745at 6562.186 kb on + strand, within Pf6N2E2_5745at 6562.186 kb on + strand, within Pf6N2E2_5745at 6562.186 kb on + strand, within Pf6N2E2_5745at 6562.187 kb on - strand, within Pf6N2E2_5745at 6562.187 kb on - strand, within Pf6N2E2_5745at 6562.187 kb on - strand, within Pf6N2E2_5745at 6562.187 kb on - strand, within Pf6N2E2_5745at 6562.824 kb on + strand, within Pf6N2E2_5746at 6562.824 kb on + strand, within Pf6N2E2_5746at 6562.824 kb on + strand, within Pf6N2E2_5746at 6562.825 kb on - strand, within Pf6N2E2_5746at 6562.825 kb on - strand, within Pf6N2E2_5746at 6563.057 kb on - strandat 6563.134 kb on + strandat 6563.221 kb on - strand, within Pf6N2E2_5747at 6563.390 kb on + strand, within Pf6N2E2_5747at 6563.391 kb on - strand, within Pf6N2E2_5747at 6563.391 kb on - strand, within Pf6N2E2_5747at 6563.391 kb on - strand, within Pf6N2E2_5747at 6563.510 kb on - strand, within Pf6N2E2_5747at 6563.559 kb on - strand, within Pf6N2E2_5747at 6563.606 kb on + strand, within Pf6N2E2_5747at 6563.606 kb on + strand, within Pf6N2E2_5747at 6563.761 kb on + strandat 6563.761 kb on + strandat 6563.761 kb on + strandat 6563.761 kb on + strandat 6563.762 kb on - strandat 6563.762 kb on - strandat 6563.763 kb on + strandat 6563.763 kb on + strandat 6563.763 kb on + strandat 6563.763 kb on + strandat 6563.764 kb on - strandat 6563.764 kb on - strandat 6563.882 kb on + strandat 6563.882 kb on + strandat 6563.882 kb on + strandat 6563.882 kb on + strandat 6563.883 kb on - strandat 6563.883 kb on - strandat 6563.883 kb on - strandat 6563.883 kb on - strandat 6564.003 kb on + strand, within Pf6N2E2_5748at 6564.004 kb on - strand, within Pf6N2E2_5748at 6564.004 kb on - strand, within Pf6N2E2_5748

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
remove
6,561,474 - Pf6N2E2_5744 0.71 +0.4
6,561,897 - Pf6N2E2_5745 0.21 +0.4
6,561,897 - Pf6N2E2_5745 0.21 -0.6
6,561,897 - Pf6N2E2_5745 0.21 +0.1
6,561,924 + Pf6N2E2_5745 0.25 +0.4
6,561,925 - Pf6N2E2_5745 0.26 -0.6
6,562,016 + Pf6N2E2_5745 0.41 +0.4
6,562,016 + Pf6N2E2_5745 0.41 -0.5
6,562,017 - Pf6N2E2_5745 0.41 +0.4
6,562,079 + Pf6N2E2_5745 0.52 +0.4
6,562,079 + Pf6N2E2_5745 0.52 -0.6
6,562,103 - Pf6N2E2_5745 0.56 +0.4
6,562,186 + Pf6N2E2_5745 0.71 +0.4
6,562,186 + Pf6N2E2_5745 0.71 +0.4
6,562,186 + Pf6N2E2_5745 0.71 +0.4
6,562,187 - Pf6N2E2_5745 0.71 +0.4
6,562,187 - Pf6N2E2_5745 0.71 -0.6
6,562,187 - Pf6N2E2_5745 0.71 +0.4
6,562,187 - Pf6N2E2_5745 0.71 +0.4
6,562,824 + Pf6N2E2_5746 0.65 -1.2
6,562,824 + Pf6N2E2_5746 0.65 +0.4
6,562,824 + Pf6N2E2_5746 0.65 -3.2
6,562,825 - Pf6N2E2_5746 0.65 +0.4
6,562,825 - Pf6N2E2_5746 0.65 -0.6
6,563,057 - -0.4
6,563,134 + +0.4
6,563,221 - Pf6N2E2_5747 0.16 +0.4
6,563,390 + Pf6N2E2_5747 0.44 -0.6
6,563,391 - Pf6N2E2_5747 0.44 +0.4
6,563,391 - Pf6N2E2_5747 0.44 +0.4
6,563,391 - Pf6N2E2_5747 0.44 -0.4
6,563,510 - Pf6N2E2_5747 0.64 +0.4
6,563,559 - Pf6N2E2_5747 0.72 +0.4
6,563,606 + Pf6N2E2_5747 0.79 -0.5
6,563,606 + Pf6N2E2_5747 0.79 +0.4
6,563,761 + +0.4
6,563,761 + -0.6
6,563,761 + +0.4
6,563,761 + -1.2
6,563,762 - +0.4
6,563,762 - -1.6
6,563,763 + +0.4
6,563,763 + +0.4
6,563,763 + -0.2
6,563,763 + +0.4
6,563,764 - +0.4
6,563,764 - -0.9
6,563,882 + -0.4
6,563,882 + +0.4
6,563,882 + +0.4
6,563,882 + -0.8
6,563,883 - +0.4
6,563,883 - -0.6
6,563,883 - +0.4
6,563,883 - -0.6
6,564,003 + Pf6N2E2_5748 0.31 -0.8
6,564,004 - Pf6N2E2_5748 0.31 +0.4
6,564,004 - Pf6N2E2_5748 0.31 +0.4

Or see this region's nucleotide sequence