Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_480

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_479 and Pf6N2E2_480 are separated by 0 nucleotidesPf6N2E2_480 and Pf6N2E2_481 are separated by 1 nucleotides Pf6N2E2_479 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data), at 544,889 to 546,160 _479 Pf6N2E2_480 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data), at 546,161 to 547,219 _480 Pf6N2E2_481 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data), at 547,221 to 548,456 _481 Position (kb) 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1at 545.497 kb on - strand, within Pf6N2E2_479at 545.599 kb on - strand, within Pf6N2E2_479at 545.599 kb on - strand, within Pf6N2E2_479at 545.643 kb on + strand, within Pf6N2E2_479at 545.644 kb on - strand, within Pf6N2E2_479at 545.644 kb on - strand, within Pf6N2E2_479at 546.053 kb on + strandat 546.053 kb on + strandat 546.146 kb on - strandat 546.216 kb on + strandat 546.216 kb on + strandat 546.217 kb on - strandat 546.483 kb on + strand, within Pf6N2E2_480at 546.483 kb on + strand, within Pf6N2E2_480at 546.483 kb on + strand, within Pf6N2E2_480at 546.483 kb on + strand, within Pf6N2E2_480at 546.483 kb on + strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.484 kb on - strand, within Pf6N2E2_480at 546.498 kb on + strand, within Pf6N2E2_480at 546.498 kb on + strand, within Pf6N2E2_480at 546.498 kb on + strand, within Pf6N2E2_480at 546.499 kb on - strand, within Pf6N2E2_480at 546.499 kb on - strand, within Pf6N2E2_480at 546.499 kb on - strandat 546.561 kb on + strand, within Pf6N2E2_480at 546.561 kb on + strand, within Pf6N2E2_480at 546.562 kb on - strand, within Pf6N2E2_480at 546.562 kb on - strand, within Pf6N2E2_480at 546.562 kb on - strand, within Pf6N2E2_480at 546.565 kb on - strand, within Pf6N2E2_480at 546.645 kb on + strand, within Pf6N2E2_480at 546.645 kb on + strand, within Pf6N2E2_480at 546.645 kb on + strand, within Pf6N2E2_480at 546.646 kb on - strand, within Pf6N2E2_480at 546.646 kb on - strand, within Pf6N2E2_480at 546.721 kb on - strand, within Pf6N2E2_480at 546.804 kb on + strand, within Pf6N2E2_480at 546.804 kb on + strand, within Pf6N2E2_480at 546.804 kb on + strand, within Pf6N2E2_480at 546.804 kb on + strand, within Pf6N2E2_480at 546.804 kb on + strand, within Pf6N2E2_480at 546.805 kb on - strand, within Pf6N2E2_480at 546.805 kb on - strand, within Pf6N2E2_480at 546.913 kb on - strand, within Pf6N2E2_480at 546.918 kb on + strand, within Pf6N2E2_480at 546.918 kb on + strand, within Pf6N2E2_480at 546.918 kb on + strand, within Pf6N2E2_480at 546.918 kb on + strand, within Pf6N2E2_480at 546.919 kb on - strand, within Pf6N2E2_480at 546.919 kb on - strand, within Pf6N2E2_480at 546.919 kb on - strand, within Pf6N2E2_480at 546.919 kb on - strand, within Pf6N2E2_480at 547.032 kb on + strand, within Pf6N2E2_480at 547.033 kb on - strand, within Pf6N2E2_480at 547.033 kb on - strand, within Pf6N2E2_480at 547.033 kb on - strand, within Pf6N2E2_480at 547.077 kb on + strand, within Pf6N2E2_480at 547.078 kb on - strandat 547.198 kb on + strandat 547.199 kb on - strandat 547.199 kb on - strandat 547.274 kb on - strandat 547.274 kb on - strandat 547.427 kb on + strand, within Pf6N2E2_481at 547.427 kb on + strand, within Pf6N2E2_481at 547.427 kb on + strand, within Pf6N2E2_481at 547.427 kb on + strand, within Pf6N2E2_481at 547.428 kb on - strand, within Pf6N2E2_481at 547.428 kb on - strand, within Pf6N2E2_481at 547.945 kb on + strand, within Pf6N2E2_481at 547.945 kb on + strand, within Pf6N2E2_481at 547.945 kb on + strand, within Pf6N2E2_481at 547.945 kb on + strand, within Pf6N2E2_481at 547.946 kb on - strand, within Pf6N2E2_481at 547.946 kb on - strand, within Pf6N2E2_481at 547.946 kb on - strand, within Pf6N2E2_481at 547.946 kb on - strand, within Pf6N2E2_481at 547.957 kb on - strand, within Pf6N2E2_481at 548.137 kb on + strand, within Pf6N2E2_481at 548.138 kb on - strand, within Pf6N2E2_481at 548.185 kb on + strand, within Pf6N2E2_481at 548.185 kb on + strandat 548.186 kb on - strand, within Pf6N2E2_481

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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545,497 - Pf6N2E2_479 0.48 -2.4
545,599 - Pf6N2E2_479 0.56 +0.3
545,599 - Pf6N2E2_479 0.56 -1.3
545,643 + Pf6N2E2_479 0.59 -3.1
545,644 - Pf6N2E2_479 0.59 -0.7
545,644 - Pf6N2E2_479 0.59 +0.3
546,053 + -0.7
546,053 + +0.3
546,146 - -2.0
546,216 + -2.6
546,216 + +0.3
546,217 - -2.6
546,483 + Pf6N2E2_480 0.30 +0.3
546,483 + Pf6N2E2_480 0.30 +0.3
546,483 + Pf6N2E2_480 0.30 +0.3
546,483 + Pf6N2E2_480 0.30 -0.7
546,483 + Pf6N2E2_480 0.30 -2.2
546,484 - Pf6N2E2_480 0.31 -0.7
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 -0.9
546,484 - Pf6N2E2_480 0.31 -3.5
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 -0.2
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 +0.3
546,484 - Pf6N2E2_480 0.31 -2.7
546,498 + Pf6N2E2_480 0.32 +0.3
546,498 + Pf6N2E2_480 0.32 +0.3
546,498 + Pf6N2E2_480 0.32 -1.7
546,499 - Pf6N2E2_480 0.32 -0.7
546,499 - Pf6N2E2_480 0.32 +0.3
546,499 - -0.7
546,561 + Pf6N2E2_480 0.38 +0.3
546,561 + Pf6N2E2_480 0.38 +0.3
546,562 - Pf6N2E2_480 0.38 -0.7
546,562 - Pf6N2E2_480 0.38 -2.3
546,562 - Pf6N2E2_480 0.38 -1.3
546,565 - Pf6N2E2_480 0.38 -2.3
546,645 + Pf6N2E2_480 0.46 +0.3
546,645 + Pf6N2E2_480 0.46 -0.7
546,645 + Pf6N2E2_480 0.46 +0.3
546,646 - Pf6N2E2_480 0.46 +0.3
546,646 - Pf6N2E2_480 0.46 +0.3
546,721 - Pf6N2E2_480 0.53 +0.3
546,804 + Pf6N2E2_480 0.61 +0.3
546,804 + Pf6N2E2_480 0.61 +0.3
546,804 + Pf6N2E2_480 0.61 +0.3
546,804 + Pf6N2E2_480 0.61 -0.7
546,804 + Pf6N2E2_480 0.61 +0.3
546,805 - Pf6N2E2_480 0.61 +0.3
546,805 - Pf6N2E2_480 0.61 -0.7
546,913 - Pf6N2E2_480 0.71 +0.3
546,918 + Pf6N2E2_480 0.71 +0.3
546,918 + Pf6N2E2_480 0.71 +0.3
546,918 + Pf6N2E2_480 0.71 +0.3
546,918 + Pf6N2E2_480 0.71 +0.3
546,919 - Pf6N2E2_480 0.72 -0.7
546,919 - Pf6N2E2_480 0.72 +0.3
546,919 - Pf6N2E2_480 0.72 -0.7
546,919 - Pf6N2E2_480 0.72 -1.7
547,032 + Pf6N2E2_480 0.82 +0.3
547,033 - Pf6N2E2_480 0.82 +0.3
547,033 - Pf6N2E2_480 0.82 +0.3
547,033 - Pf6N2E2_480 0.82 -2.0
547,077 + Pf6N2E2_480 0.86 -0.7
547,078 - -0.7
547,198 + +0.3
547,199 - -0.7
547,199 - -3.0
547,274 - -0.7
547,274 - +0.3
547,427 + Pf6N2E2_481 0.17 +0.3
547,427 + Pf6N2E2_481 0.17 -0.7
547,427 + Pf6N2E2_481 0.17 +0.3
547,427 + Pf6N2E2_481 0.17 -1.3
547,428 - Pf6N2E2_481 0.17 -0.7
547,428 - Pf6N2E2_481 0.17 +0.3
547,945 + Pf6N2E2_481 0.59 +0.3
547,945 + Pf6N2E2_481 0.59 -1.3
547,945 + Pf6N2E2_481 0.59 +0.3
547,945 + Pf6N2E2_481 0.59 -0.7
547,946 - Pf6N2E2_481 0.59 -0.7
547,946 - Pf6N2E2_481 0.59 -2.5
547,946 - Pf6N2E2_481 0.59 +0.3
547,946 - Pf6N2E2_481 0.59 -2.9
547,957 - Pf6N2E2_481 0.60 +0.3
548,137 + Pf6N2E2_481 0.74 +0.3
548,138 - Pf6N2E2_481 0.74 -3.0
548,185 + Pf6N2E2_481 0.78 +0.3
548,185 + +0.3
548,186 - Pf6N2E2_481 0.78 +0.3

Or see this region's nucleotide sequence