Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4508

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
5,238,378	+		Pf6N2E2_4506	0.40	+0.5
5,238,378	+		Pf6N2E2_4506	0.40	-0.5
5,238,872	+				-0.5
5,238,872	+				-1.0
5,238,873	-				-0.4
5,238,873	-				-0.5
5,238,893	+				+0.5
5,238,894	-				-1.5
5,238,894	-				-0.7
5,239,089	-				-0.5
5,239,204	+				-0.2
5,239,205	-				+0.5
5,239,311	+				-0.5
5,239,311	+				+0.5
5,239,312	-				+0.1
5,239,323	+				-0.8
5,239,323	+				-1.0
5,239,323	+				-0.6
5,239,324	-				+0.5
5,239,324	-				+0.5
5,239,335	+				+0.5
5,239,335	+				-1.6
5,239,335	+				-0.5
5,239,336	-				+0.5
5,239,336	-				-0.8
5,239,398	-		Pf6N2E2_4508	0.17	-1.0
5,239,410	+		Pf6N2E2_4508	0.19	-0.5
5,239,605	+		Pf6N2E2_4508	0.50	+0.5
5,239,605	+		Pf6N2E2_4508	0.50	-1.0
5,239,605	+		Pf6N2E2_4508	0.50	-0.5
5,239,606	-		Pf6N2E2_4508	0.50	-0.5
5,239,606	-		Pf6N2E2_4508	0.50	+0.5
5,239,803	+		Pf6N2E2_4508	0.81	+0.5
5,239,804	-		Pf6N2E2_4508	0.81	-1.0
5,239,952	+				-0.3
5,239,952	+				-0.5
5,239,953	-				-0.5
5,239,953	-				+0.5
5,239,953	-				+0.5
5,239,953	-				-0.4
5,239,953	-				+0.5
5,239,976	+				-0.5
5,239,976	+				-0.5
5,239,976	+				-1.5
5,239,977	-				+0.5
5,239,980	+				+0.5
5,239,980	+				-0.5
5,239,980	+				+0.5
5,239,980	+				-1.0
5,239,980	+				+0.5
5,239,981	-				-0.3
5,239,981	-				+0.5
5,239,981	-				-0.1
5,239,981	-				-0.7
5,239,981	-				+0.5
5,240,021	-				-0.1
5,240,021	-				+0.5
5,240,021	-				+0.5
5,240,021	-				+0.5
5,240,039	+				-1.0
5,240,040	-				+0.5
5,240,040	-				+0.5
5,240,067	-				-0.5
5,240,099	+				-0.5
5,240,099	+				-0.4
5,240,099	+				-0.5
5,240,099	+				-1.8
5,240,099	+				-1.5
5,240,100	-				+1.5
5,240,100	-				-0.5
5,240,100	-				-0.8
5,240,100	-				+0.5
5,240,127	-				+0.5
5,240,179	+				-1.0
5,240,180	-				-1.5
5,240,221	-				+0.5
5,240,233	+				-0.5
5,240,234	-				-1.5
5,240,234	-				-0.5
5,240,240	+				+0.5
5,240,241	-				-1.0
5,240,241	-				-1.5
5,240,248	+				+0.5
5,240,248	+				+0.5
5,240,248	+				-0.5
5,240,257	+				-0.3
5,240,258	-				+0.5
5,240,258	-				+0.5
5,240,258	-				+0.5
5,240,321	+				+0.5
5,240,321	+				-1.0
5,240,322	-				-1.0
5,240,322	-				+0.5
5,240,322	-				-1.5
5,240,329	+				-2.3
5,240,344	+				+0.2
5,240,344	+				-0.5
5,240,345	-				-0.5
5,240,345	-				+0.5
5,240,345	-				+0.5
5,240,425	+		Pf6N2E2_4509	0.15	-1.5
5,240,425	+		Pf6N2E2_4509	0.15	-0.7
5,240,425	+		Pf6N2E2_4509	0.15	-1.0
5,240,426	-		Pf6N2E2_4509	0.15	-1.0
5,240,426	-		Pf6N2E2_4509	0.15	-0.5
5,240,513	-		Pf6N2E2_4509	0.22	-1.0
5,240,632	+		Pf6N2E2_4509	0.31	-0.6
5,240,633	-		Pf6N2E2_4509	0.32	-0.5
5,240,633	-		Pf6N2E2_4509	0.32	-0.4
5,240,657	-		Pf6N2E2_4509	0.33	-0.5
5,240,657	-		Pf6N2E2_4509	0.33	-0.1
5,240,784	-		Pf6N2E2_4509	0.43	+0.5
5,240,784	-		Pf6N2E2_4509	0.43	-1.8
5,240,872	+		Pf6N2E2_4509	0.50	+0.5
5,240,911	+		Pf6N2E2_4509	0.53	+0.5
5,240,911	+		Pf6N2E2_4509	0.53	-2.0
5,240,911	+		Pf6N2E2_4509	0.53	-0.5