Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4405

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
5,137,348	+		Pf6N2E2_4404	0.61	+0.5
5,137,348	+		Pf6N2E2_4404	0.61	+0.5
5,137,348	+		Pf6N2E2_4404	0.61	+0.5
5,137,348	+		Pf6N2E2_4404	0.61	+0.5
5,137,349	-		Pf6N2E2_4404	0.61	-1.3
5,137,349	-		Pf6N2E2_4404	0.61	+0.5
5,137,349	-		Pf6N2E2_4404	0.61	+0.5
5,137,349	-		Pf6N2E2_4404	0.61	-0.5
5,137,349	-		Pf6N2E2_4404	0.61	-1.7
5,137,349	-		Pf6N2E2_4404	0.61	-1.5
5,137,894	+				+0.5
5,137,895	-				-0.5
5,137,895	-				+0.5
5,137,980	+				-1.0
5,137,980	+				+0.5
5,137,981	-				+0.4
5,138,135	+				+0.5
5,138,135	+				-0.0
5,138,136	-				+0.6
5,138,136	-				+0.5
5,138,252	+				-1.8
5,138,252	+				-1.8
5,138,252	+				-0.5
5,138,252	+				+0.5
5,138,252	+				-0.5
5,138,252	+				-0.6
5,138,252	+				+0.5
5,138,252	+				-1.0
5,138,252	+				+0.5
5,138,252	+				-1.0
5,138,252	+				-0.5
5,138,253	-				+0.3
5,138,253	-				+2.1
5,138,253	-				+0.1
5,138,253	-				+0.1
5,138,315	+				-1.0
5,138,315	+				-0.5
5,138,315	+				-0.5
5,138,315	+				-0.5
5,138,315	+				-1.0
5,138,316	-				+0.3
5,138,316	-				-0.2
5,138,316	-				+1.8
5,138,316	-				-0.6
5,138,342	+		Pf6N2E2_4405	0.12	+0.5
5,138,342	+		Pf6N2E2_4405	0.12	-0.5
5,138,342	+		Pf6N2E2_4405	0.12	+1.9
5,138,342	+		Pf6N2E2_4405	0.12	-2.3
5,138,343	-		Pf6N2E2_4405	0.12	+0.9
5,138,343	-		Pf6N2E2_4405	0.12	+0.4
5,138,343	-		Pf6N2E2_4405	0.12	+0.3
5,138,459	+		Pf6N2E2_4405	0.21	+0.5
5,138,459	+		Pf6N2E2_4405	0.21	-2.5
5,138,459	+		Pf6N2E2_4405	0.21	-0.6
5,138,459	+		Pf6N2E2_4405	0.21	+0.5
5,138,459	+		Pf6N2E2_4405	0.21	-0.5
5,138,459	+		Pf6N2E2_4405	0.21	-0.5
5,138,460	-		Pf6N2E2_4405	0.21	+0.2
5,138,460	-		Pf6N2E2_4405	0.21	+0.3
5,138,460	-		Pf6N2E2_4405	0.21	+0.3
5,138,460	-		Pf6N2E2_4405	0.21	-0.3
5,138,460	-		Pf6N2E2_4405	0.21	-0.3
5,138,460	-		Pf6N2E2_4405	0.21	+0.2
5,138,460	-		Pf6N2E2_4405	0.21	+0.5
5,138,462	+		Pf6N2E2_4405	0.21	-0.3
5,138,462	+		Pf6N2E2_4405	0.21	+0.5
5,138,463	-		Pf6N2E2_4405	0.21	+0.5
5,138,463	-		Pf6N2E2_4405	0.21	+0.2
5,138,720	+		Pf6N2E2_4405	0.41	-0.5
5,138,720	+		Pf6N2E2_4405	0.41	-0.5
5,138,843	+		Pf6N2E2_4405	0.51	-0.5
5,138,843	+		Pf6N2E2_4405	0.51	+0.5
5,138,843	+		Pf6N2E2_4405	0.51	+0.5
5,138,844	-		Pf6N2E2_4405	0.51	-0.0
5,139,082	+		Pf6N2E2_4405	0.69	-0.8
5,139,083	-		Pf6N2E2_4405	0.69	-0.5
5,139,083	-		Pf6N2E2_4405	0.69	-0.5
5,139,085	-		Pf6N2E2_4405	0.70	+0.2
5,139,085	-		Pf6N2E2_4405	0.70	-0.5
5,139,340	+		Pf6N2E2_4405	0.90	-0.5
5,139,340	+		Pf6N2E2_4405	0.90	-1.0
5,139,341	-		Pf6N2E2_4405	0.90	+0.5
5,139,341	-		Pf6N2E2_4405	0.90	-0.5
5,139,341	-		Pf6N2E2_4405	0.90	+0.5
5,139,341	-		Pf6N2E2_4405	0.90	-0.5
5,139,412	+				+0.5
5,139,481	+				+0.5
5,139,779	-		Pf6N2E2_4406	0.18	-0.3
5,139,794	-		Pf6N2E2_4406	0.19	-0.0
5,139,794	-		Pf6N2E2_4406	0.19	+0.5
5,139,794	-		Pf6N2E2_4406	0.19	+0.5
5,139,796	+		Pf6N2E2_4406	0.19	-0.5
5,139,796	+		Pf6N2E2_4406	0.19	-1.0
5,139,796	+		Pf6N2E2_4406	0.19	+0.5
5,139,796	+		Pf6N2E2_4406	0.19	-0.5
5,139,797	-		Pf6N2E2_4406	0.19	-1.5
5,139,797	-		Pf6N2E2_4406	0.19	+0.5
5,139,797	-		Pf6N2E2_4406	0.19	-1.8
5,140,015	+		Pf6N2E2_4406	0.33	-0.7
5,140,015	+		Pf6N2E2_4406	0.33	-2.0
5,140,016	-		Pf6N2E2_4406	0.33	-0.7
5,140,016	-		Pf6N2E2_4406	0.33	-1.4
5,140,016	-		Pf6N2E2_4406	0.33	-1.1
5,140,016	-		Pf6N2E2_4406	0.33	+0.5
5,140,061	-		Pf6N2E2_4406	0.36	+0.5
5,140,061	-		Pf6N2E2_4406	0.36	-0.6
5,140,170	-		Pf6N2E2_4406	0.42	-0.9
5,140,170	-		Pf6N2E2_4406	0.42	-0.5
5,140,238	-		Pf6N2E2_4406	0.46	-0.6
5,140,238	-		Pf6N2E2_4406	0.46	-0.5
5,140,238	-		Pf6N2E2_4406	0.46	-1.0
5,140,255	+		Pf6N2E2_4406	0.47	-0.3
5,140,255	-		Pf6N2E2_4406	0.47	-0.3
5,140,297	+		Pf6N2E2_4406	0.50	-0.4
5,140,297	+		Pf6N2E2_4406	0.50	+0.5
5,140,298	-		Pf6N2E2_4406	0.50	-0.5
5,140,298	-		Pf6N2E2_4406	0.50	-1.6
5,140,394	+		Pf6N2E2_4406	0.56	+0.5
5,140,394	+		Pf6N2E2_4406	0.56	-1.0
5,140,395	-		Pf6N2E2_4406	0.56	-0.5
5,140,411	+				-0.8
5,140,411	+		Pf6N2E2_4406	0.57	-1.5
5,140,412	-		Pf6N2E2_4406	0.57	-1.4
5,140,412	-		Pf6N2E2_4406	0.57	-1.5