Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4374

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4372 and Pf6N2E2_4373 are separated by 53 nucleotidesPf6N2E2_4373 and Pf6N2E2_4374 are separated by 27 nucleotidesPf6N2E2_4374 and Pf6N2E2_4375 are separated by 257 nucleotidesPf6N2E2_4375 and Pf6N2E2_4376 are separated by 4 nucleotides Pf6N2E2_4372 - FIG00460773: hypothetical protein, at 5,100,511 to 5,101,755 _4372 Pf6N2E2_4373 - Acetylglutamate kinase (EC 2.7.2.8), at 5,101,809 to 5,102,714 _4373 Pf6N2E2_4374 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 5,102,742 to 5,104,139 _4374 Pf6N2E2_4375 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 5,104,397 to 5,104,852 _4375 Pf6N2E2_4376 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 5,104,857 to 5,106,065 _4376 Position (kb) 5102 5103 5104 5105Strain fitness (log2 ratio) -2 -1 0 1at 5101.779 kb on + strandat 5101.780 kb on - strandat 5101.780 kb on - strandat 5101.780 kb on - strandat 5101.810 kb on + strandat 5101.811 kb on - strandat 5101.811 kb on - strandat 5101.811 kb on - strandat 5101.839 kb on - strandat 5101.839 kb on - strandat 5101.839 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strandat 5102.845 kb on - strandat 5103.002 kb on + strand, within Pf6N2E2_4374at 5103.002 kb on + strand, within Pf6N2E2_4374at 5103.017 kb on + strand, within Pf6N2E2_4374at 5103.018 kb on - strand, within Pf6N2E2_4374at 5103.018 kb on - strand, within Pf6N2E2_4374at 5103.024 kb on - strand, within Pf6N2E2_4374at 5103.024 kb on - strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.103 kb on + strand, within Pf6N2E2_4374at 5103.104 kb on - strand, within Pf6N2E2_4374at 5103.104 kb on - strand, within Pf6N2E2_4374at 5103.104 kb on - strand, within Pf6N2E2_4374at 5103.282 kb on - strand, within Pf6N2E2_4374at 5103.658 kb on + strand, within Pf6N2E2_4374at 5103.659 kb on - strand, within Pf6N2E2_4374at 5103.659 kb on - strand, within Pf6N2E2_4374at 5103.793 kb on + strand, within Pf6N2E2_4374at 5103.793 kb on + strand, within Pf6N2E2_4374at 5103.793 kb on + strand, within Pf6N2E2_4374at 5103.793 kb on + strand, within Pf6N2E2_4374at 5103.794 kb on - strand, within Pf6N2E2_4374at 5103.859 kb on + strand, within Pf6N2E2_4374at 5103.860 kb on - strand, within Pf6N2E2_4374at 5103.862 kb on + strand, within Pf6N2E2_4374at 5103.862 kb on + strand, within Pf6N2E2_4374at 5103.862 kb on + strand, within Pf6N2E2_4374at 5103.862 kb on + strand, within Pf6N2E2_4374at 5103.863 kb on - strand, within Pf6N2E2_4374at 5103.863 kb on - strand, within Pf6N2E2_4374at 5103.927 kb on + strand, within Pf6N2E2_4374at 5103.928 kb on - strand, within Pf6N2E2_4374at 5103.928 kb on - strand, within Pf6N2E2_4374at 5104.084 kb on + strandat 5104.153 kb on + strandat 5104.211 kb on + strandat 5104.211 kb on + strandat 5104.285 kb on + strandat 5104.285 kb on + strandat 5104.286 kb on - strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.288 kb on + strandat 5104.289 kb on - strandat 5104.289 kb on - strandat 5104.289 kb on - strandat 5104.289 kb on - strandat 5104.289 kb on - strandat 5104.313 kb on - strandat 5104.313 kb on - strandat 5104.859 kb on - strandat 5104.859 kb on - strandat 5104.859 kb on - strandat 5104.859 kb on - strandat 5104.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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5,101,779 + +0.5
5,101,780 - +0.5
5,101,780 - +0.5
5,101,780 - -1.0
5,101,810 + -1.8
5,101,811 - -0.0
5,101,811 - -0.8
5,101,811 - -1.0
5,101,839 - -2.0
5,101,839 - +0.5
5,101,839 - -1.5
5,102,752 - +0.5
5,102,752 - -0.5
5,102,752 - +0.5
5,102,752 - -0.7
5,102,845 - -0.5
5,103,002 + Pf6N2E2_4374 0.19 -0.5
5,103,002 + Pf6N2E2_4374 0.19 -0.5
5,103,017 + Pf6N2E2_4374 0.20 +0.5
5,103,018 - Pf6N2E2_4374 0.20 +0.5
5,103,018 - Pf6N2E2_4374 0.20 -0.5
5,103,024 - Pf6N2E2_4374 0.20 -0.5
5,103,024 - Pf6N2E2_4374 0.20 +0.5
5,103,103 + Pf6N2E2_4374 0.26 -0.5
5,103,103 + Pf6N2E2_4374 0.26 -0.2
5,103,103 + Pf6N2E2_4374 0.26 -1.0
5,103,103 + Pf6N2E2_4374 0.26 +0.5
5,103,103 + Pf6N2E2_4374 0.26 -0.4
5,103,103 + Pf6N2E2_4374 0.26 -0.9
5,103,103 + Pf6N2E2_4374 0.26 -1.5
5,103,103 + Pf6N2E2_4374 0.26 -2.0
5,103,104 - Pf6N2E2_4374 0.26 -0.5
5,103,104 - Pf6N2E2_4374 0.26 +0.5
5,103,104 - Pf6N2E2_4374 0.26 -1.5
5,103,282 - Pf6N2E2_4374 0.39 +0.5
5,103,658 + Pf6N2E2_4374 0.66 -1.5
5,103,659 - Pf6N2E2_4374 0.66 -1.0
5,103,659 - Pf6N2E2_4374 0.66 +0.5
5,103,793 + Pf6N2E2_4374 0.75 -0.2
5,103,793 + Pf6N2E2_4374 0.75 +0.5
5,103,793 + Pf6N2E2_4374 0.75 -1.8
5,103,793 + Pf6N2E2_4374 0.75 +0.1
5,103,794 - Pf6N2E2_4374 0.75 -0.5
5,103,859 + Pf6N2E2_4374 0.80 -0.5
5,103,860 - Pf6N2E2_4374 0.80 -0.5
5,103,862 + Pf6N2E2_4374 0.80 +0.5
5,103,862 + Pf6N2E2_4374 0.80 -0.8
5,103,862 + Pf6N2E2_4374 0.80 +0.5
5,103,862 + Pf6N2E2_4374 0.80 +0.5
5,103,863 - Pf6N2E2_4374 0.80 -0.7
5,103,863 - Pf6N2E2_4374 0.80 -0.5
5,103,927 + Pf6N2E2_4374 0.85 -0.6
5,103,928 - Pf6N2E2_4374 0.85 -1.0
5,103,928 - Pf6N2E2_4374 0.85 -0.8
5,104,084 + -0.6
5,104,153 + -0.3
5,104,211 + -1.8
5,104,211 + +0.5
5,104,285 + -0.5
5,104,285 + +0.5
5,104,286 - -1.0
5,104,288 + +0.5
5,104,288 + -0.2
5,104,288 + +0.0
5,104,288 + -1.1
5,104,288 + -0.4
5,104,288 + +0.5
5,104,288 + +0.5
5,104,288 + +0.5
5,104,288 + -1.2
5,104,288 + +0.5
5,104,288 + -0.5
5,104,288 + -0.5
5,104,288 + -1.5
5,104,288 + -0.7
5,104,288 + +0.5
5,104,288 + -1.2
5,104,289 - +0.5
5,104,289 - +0.5
5,104,289 - +0.5
5,104,289 - -0.0
5,104,289 - -0.6
5,104,313 - -0.5
5,104,313 - +0.1
5,104,859 - -1.0
5,104,859 - +0.5
5,104,859 - +0.5
5,104,859 - -0.5
5,104,859 - -0.7

Or see this region's nucleotide sequence