Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4279

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
4,979,734	+		Pf6N2E2_4278	0.53	-3.0
4,979,734	+		Pf6N2E2_4278	0.53	-0.5
4,979,735	-		Pf6N2E2_4278	0.53	-0.8
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-2.3
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-0.5
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-1.0
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,825	-		Pf6N2E2_4278	0.60	+0.5
4,979,825	-		Pf6N2E2_4278	0.60	-0.5
4,979,825	-		Pf6N2E2_4278	0.60	+0.5
4,979,985	+		Pf6N2E2_4278	0.71	-1.3
4,980,044	-		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-1.0
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,047	-		Pf6N2E2_4278	0.75	-2.7
4,980,047	-		Pf6N2E2_4278	0.75	+0.5
4,980,047	-		Pf6N2E2_4278	0.75	-2.8
4,980,047	-		Pf6N2E2_4278	0.75	-3.7
4,980,047	-		Pf6N2E2_4278	0.75	+0.5
4,980,047	-		Pf6N2E2_4278	0.75	-1.0
4,980,088	+		Pf6N2E2_4278	0.78	+0.5
4,980,088	+		Pf6N2E2_4278	0.78	-1.3
4,980,088	+		Pf6N2E2_4278	0.78	+0.5
4,980,088	+		Pf6N2E2_4278	0.78	-1.0
4,980,088	+		Pf6N2E2_4278	0.78	-0.0
4,980,089	-		Pf6N2E2_4278	0.78	-0.5
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-1.5
4,980,232	+		Pf6N2E2_4278	0.89	-0.5
4,980,232	+		Pf6N2E2_4278	0.89	-0.5
4,980,232	+		Pf6N2E2_4278	0.89	-1.0
4,980,233	-		Pf6N2E2_4278	0.89	+0.5
4,980,235	+		Pf6N2E2_4278	0.89	+0.5
4,980,236	-		Pf6N2E2_4278	0.89	+0.5
4,980,236	-		Pf6N2E2_4278	0.89	-2.6
4,980,283	-				-1.0
4,980,283	-				-3.6
4,980,319	+				+0.5
4,980,319	+				+0.5
4,980,320	-				+0.5
4,980,320	-				-1.0
4,980,400	+				-0.8
4,980,400	+				+0.5
4,980,400	+				+0.5
4,980,400	+				-0.5
4,980,400	+				+0.5
4,980,401	-				-1.8
4,980,401	-				-1.0
4,980,401	-				+0.5
4,980,401	-				-3.6
4,980,401	-				-4.4
4,980,401	-				+0.5
4,980,401	-				-3.4
4,980,401	-				-3.6
4,980,574	-				-0.5
4,980,686	+		Pf6N2E2_4279	0.15	-0.5
4,980,686	+		Pf6N2E2_4279	0.15	-3.1
4,980,842	+		Pf6N2E2_4279	0.24	-0.5
4,980,843	-		Pf6N2E2_4279	0.24	-0.5
4,980,843	-		Pf6N2E2_4279	0.24	-1.5
4,981,157	-		Pf6N2E2_4279	0.41	-3.2
4,981,214	+		Pf6N2E2_4279	0.45	-1.5
4,981,214	+		Pf6N2E2_4279	0.45	-3.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-0.5
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	-2.8
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,220	+		Pf6N2E2_4279	0.45	-0.5
4,981,220	+		Pf6N2E2_4279	0.45	-0.5
4,981,238	+		Pf6N2E2_4279	0.46	-0.5
4,981,238	+		Pf6N2E2_4279	0.46	-3.6
4,981,239	-		Pf6N2E2_4279	0.46	-0.5
4,981,239	-		Pf6N2E2_4279	0.46	+0.5
4,981,239	-		Pf6N2E2_4279	0.46	-4.4
4,981,296	+		Pf6N2E2_4279	0.49	-0.5
4,981,481	+		Pf6N2E2_4279	0.59	-0.5
4,981,481	+		Pf6N2E2_4279	0.59	+0.5
4,981,481	+		Pf6N2E2_4279	0.59	-0.5
4,981,481	+		Pf6N2E2_4279	0.59	-1.5
4,981,481	+		Pf6N2E2_4279	0.59	-3.4
4,981,482	-		Pf6N2E2_4279	0.59	-0.8
4,981,511	+		Pf6N2E2_4279	0.61	-3.4
4,981,512	-		Pf6N2E2_4279	0.61	+0.5
4,981,512	-		Pf6N2E2_4279	0.61	+0.5
4,981,512	-		Pf6N2E2_4279	0.61	+0.5
4,981,688	+		Pf6N2E2_4279	0.71	-3.5
4,981,850	+		Pf6N2E2_4279	0.80	-1.0
4,981,904	+		Pf6N2E2_4279	0.83	+0.5
4,981,904	+		Pf6N2E2_4279	0.83	-3.6
4,981,904	+		Pf6N2E2_4279	0.83	-0.5
4,981,905	-		Pf6N2E2_4279	0.83	+0.5
4,981,905	-		Pf6N2E2_4279	0.83	-3.0
4,981,905	-		Pf6N2E2_4279	0.83	-1.5
4,981,905	-		Pf6N2E2_4279	0.83	-3.4
4,981,905	-		Pf6N2E2_4279	0.83	+0.5
4,981,905	-		Pf6N2E2_4279	0.83	+0.5
4,982,218	+				+0.5
4,982,219	-				+0.5
4,982,219	-				-0.5
4,982,230	+				-0.4
4,982,231	-				+0.5
4,982,240	+				-0.5
4,982,347	+				+0.6
4,982,347	+				-0.4
4,982,347	+				-1.4
4,982,347	+				-0.4
4,982,347	+				+0.6
4,982,347	+				-0.4
4,982,348	-				+0.6
4,982,348	-				+0.6
4,982,348	-				-1.3
4,982,348	-				-0.6
4,982,348	-				+0.6
4,982,348	-				-0.4
4,982,348	-				-0.4
4,982,348	-				+0.6
4,982,348	-				-0.7
4,982,348	-				-0.2
4,982,442	-				+0.6
4,982,443	+				-1.4
4,982,443	+				-1.8
4,982,443	+				+0.2
4,982,443	+				+0.6
4,982,443	+				-0.4
4,982,443	+				+0.6
4,982,443	+				-0.4
4,982,444	-				-1.0
4,982,444	-				-0.4
4,982,444	-				-0.4
4,982,444	-				-0.4
4,982,444	-				+0.6
4,982,444	-				-1.3
4,982,444	-				-0.4
4,982,444	-				-1.0
4,982,444	-				-1.0
4,982,497	+		Pf6N2E2_4280	0.11	-0.4
4,982,497	+		Pf6N2E2_4280	0.11	-1.0
4,982,498	-		Pf6N2E2_4280	0.12	-0.6
4,982,593	+		Pf6N2E2_4280	0.17	-0.3
4,982,593	+		Pf6N2E2_4280	0.17	+0.6
4,982,594	-		Pf6N2E2_4280	0.17	-1.3
4,982,665	+		Pf6N2E2_4280	0.20	-0.4
4,982,665	+		Pf6N2E2_4280	0.20	+0.6
4,982,836	+		Pf6N2E2_4280	0.29	-0.7
4,982,853	+		Pf6N2E2_4280	0.30	-0.9
4,982,884	+		Pf6N2E2_4280	0.32	-0.4
4,982,884	+		Pf6N2E2_4280	0.32	-0.4
4,982,968	-		Pf6N2E2_4280	0.36	-0.8