Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4278

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
4,978,200	+		Pf6N2E2_4277	0.39	+0.5
4,978,205	+		Pf6N2E2_4277	0.40	-3.4
4,978,205	+		Pf6N2E2_4277	0.40	-0.5
4,978,205	+		Pf6N2E2_4277	0.40	-1.4
4,978,206	-		Pf6N2E2_4277	0.40	-1.3
4,978,206	-		Pf6N2E2_4277	0.40	-1.6
4,978,206	-		Pf6N2E2_4277	0.40	-0.5
4,978,206	-		Pf6N2E2_4277	0.40	+0.5
4,978,206	-		Pf6N2E2_4277	0.40	+0.5
4,978,206	-		Pf6N2E2_4277	0.40	-1.6
4,978,206	-		Pf6N2E2_4277	0.40	-1.4
4,978,207	+		Pf6N2E2_4277	0.40	+0.5
4,978,207	+		Pf6N2E2_4277	0.40	-0.5
4,978,208	-		Pf6N2E2_4277	0.40	-0.5
4,978,208	-		Pf6N2E2_4277	0.40	+0.5
4,978,208	-		Pf6N2E2_4277	0.40	+0.5
4,978,208	-		Pf6N2E2_4277	0.40	-1.5
4,978,462	+		Pf6N2E2_4277	0.67	-2.0
4,978,462	+		Pf6N2E2_4277	0.67	-0.5
4,978,462	+		Pf6N2E2_4277	0.67	+0.5
4,978,463	-		Pf6N2E2_4277	0.67	-2.8
4,978,463	-		Pf6N2E2_4277	0.67	-0.5
4,978,463	-		Pf6N2E2_4277	0.67	-1.0
4,978,604	-		Pf6N2E2_4277	0.82	-3.0
4,978,604	-		Pf6N2E2_4277	0.82	+0.5
4,978,617	+		Pf6N2E2_4277	0.84	-1.5
4,978,617	+		Pf6N2E2_4277	0.84	-0.9
4,978,617	+		Pf6N2E2_4277	0.84	+0.5
4,978,617	+		Pf6N2E2_4277	0.84	-0.8
4,978,617	+		Pf6N2E2_4277	0.84	-1.0
4,978,618	-		Pf6N2E2_4277	0.84	-2.3
4,978,618	-		Pf6N2E2_4277	0.84	-1.0
4,978,618	-		Pf6N2E2_4277	0.84	-1.4
4,978,618	-		Pf6N2E2_4277	0.84	-1.6
4,978,618	-		Pf6N2E2_4277	0.84	+0.5
4,978,621	+		Pf6N2E2_4277	0.84	+0.5
4,978,621	+		Pf6N2E2_4277	0.84	-0.5
4,978,621	+		Pf6N2E2_4277	0.84	-1.5
4,978,621	+		Pf6N2E2_4277	0.84	-0.5
4,978,621	+		Pf6N2E2_4277	0.84	-1.0
4,978,621	+		Pf6N2E2_4277	0.84	+0.5
4,978,621	+		Pf6N2E2_4277	0.84	-0.5
4,978,622	-		Pf6N2E2_4277	0.84	-1.0
4,978,622	-		Pf6N2E2_4277	0.84	-1.5
4,978,622	-		Pf6N2E2_4277	0.84	-0.5
4,978,622	-		Pf6N2E2_4277	0.84	+0.5
4,978,622	-		Pf6N2E2_4277	0.84	-0.5
4,978,622	-		Pf6N2E2_4277	0.84	-1.7
4,978,622	-		Pf6N2E2_4277	0.84	-1.5
4,978,622	-		Pf6N2E2_4277	0.84	+0.5
4,978,622	-		Pf6N2E2_4277	0.84	-2.1
4,978,622	-		Pf6N2E2_4277	0.84	+0.5
4,978,622	-		Pf6N2E2_4277	0.84	+0.5
4,978,622	-		Pf6N2E2_4277	0.84	+0.5
4,978,668	+		Pf6N2E2_4277	0.89	-0.5
4,978,718	-				-2.2
4,978,718	-				+0.5
4,978,718	-				+0.5
4,978,818	+				-1.5
4,978,819	-				-0.6
4,978,890	-				+0.5
4,978,913	+				-1.0
4,978,914	-				-1.0
4,978,953	-				-3.0
4,978,953	-				+0.5
4,978,982	+				-1.5
4,978,982	+				-1.5
4,979,387	+		Pf6N2E2_4278	0.29	+0.5
4,979,734	+		Pf6N2E2_4278	0.53	-3.0
4,979,734	+		Pf6N2E2_4278	0.53	-0.5
4,979,735	-		Pf6N2E2_4278	0.53	-0.8
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-2.3
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-0.5
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,824	+		Pf6N2E2_4278	0.60	-1.0
4,979,824	+		Pf6N2E2_4278	0.60	+0.5
4,979,825	-		Pf6N2E2_4278	0.60	+0.5
4,979,825	-		Pf6N2E2_4278	0.60	-0.5
4,979,825	-		Pf6N2E2_4278	0.60	+0.5
4,979,985	+		Pf6N2E2_4278	0.71	-1.3
4,980,044	-		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-1.0
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,046	+		Pf6N2E2_4278	0.75	-0.5
4,980,047	-		Pf6N2E2_4278	0.75	-2.7
4,980,047	-		Pf6N2E2_4278	0.75	+0.5
4,980,047	-		Pf6N2E2_4278	0.75	-2.8
4,980,047	-		Pf6N2E2_4278	0.75	-3.7
4,980,047	-		Pf6N2E2_4278	0.75	+0.5
4,980,047	-		Pf6N2E2_4278	0.75	-1.0
4,980,088	+		Pf6N2E2_4278	0.78	+0.5
4,980,088	+		Pf6N2E2_4278	0.78	-1.3
4,980,088	+		Pf6N2E2_4278	0.78	+0.5
4,980,088	+		Pf6N2E2_4278	0.78	-1.0
4,980,088	+		Pf6N2E2_4278	0.78	-0.0
4,980,089	-		Pf6N2E2_4278	0.78	-0.5
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-2.3
4,980,089	-		Pf6N2E2_4278	0.78	-1.5
4,980,232	+		Pf6N2E2_4278	0.89	-0.5
4,980,232	+		Pf6N2E2_4278	0.89	-0.5
4,980,232	+		Pf6N2E2_4278	0.89	-1.0
4,980,233	-		Pf6N2E2_4278	0.89	+0.5
4,980,235	+		Pf6N2E2_4278	0.89	+0.5
4,980,236	-		Pf6N2E2_4278	0.89	+0.5
4,980,236	-		Pf6N2E2_4278	0.89	-2.6
4,980,283	-				-1.0
4,980,283	-				-3.6
4,980,319	+				+0.5
4,980,319	+				+0.5
4,980,320	-				+0.5
4,980,320	-				-1.0
4,980,400	+				-0.8
4,980,400	+				+0.5
4,980,400	+				+0.5
4,980,400	+				-0.5
4,980,400	+				+0.5
4,980,401	-				-1.8
4,980,401	-				-1.0
4,980,401	-				+0.5
4,980,401	-				-3.6
4,980,401	-				-4.4
4,980,401	-				+0.5
4,980,401	-				-3.4
4,980,401	-				-3.6
4,980,574	-				-0.5
4,980,686	+		Pf6N2E2_4279	0.15	-0.5
4,980,686	+		Pf6N2E2_4279	0.15	-3.1
4,980,842	+		Pf6N2E2_4279	0.24	-0.5
4,980,843	-		Pf6N2E2_4279	0.24	-0.5
4,980,843	-		Pf6N2E2_4279	0.24	-1.5
4,981,157	-		Pf6N2E2_4279	0.41	-3.2
4,981,214	+		Pf6N2E2_4279	0.45	-1.5
4,981,214	+		Pf6N2E2_4279	0.45	-3.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-0.5
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	-2.8
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,215	-		Pf6N2E2_4279	0.45	-1.0
4,981,215	-		Pf6N2E2_4279	0.45	+0.5
4,981,220	+		Pf6N2E2_4279	0.45	-0.5
4,981,220	+		Pf6N2E2_4279	0.45	-0.5
4,981,238	+		Pf6N2E2_4279	0.46	-0.5
4,981,238	+		Pf6N2E2_4279	0.46	-3.6
4,981,239	-		Pf6N2E2_4279	0.46	-0.5
4,981,239	-		Pf6N2E2_4279	0.46	+0.5
4,981,239	-		Pf6N2E2_4279	0.46	-4.4
4,981,296	+		Pf6N2E2_4279	0.49	-0.5