Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_418 and Pf6N2E2_419 are separated by 39 nucleotides Pf6N2E2_419 and Pf6N2E2_420 are separated by 15 nucleotides Pf6N2E2_420 and Pf6N2E2_421 are separated by 11 nucleotides
Pf6N2E2_418 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 486,040 to 488,142
_418
Pf6N2E2_419 - STAS domain protein, at 488,182 to 488,466
_419
Pf6N2E2_420 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 488,482 to 488,850
_420
Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013
_421
Position (kb) 488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.226 kb on + strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.227 kb on - strand, within Pf6N2E2_418 at 487.520 kb on + strand, within Pf6N2E2_418 at 487.520 kb on + strand, within Pf6N2E2_418 at 487.521 kb on - strand, within Pf6N2E2_418 at 487.521 kb on - strand, within Pf6N2E2_418 at 487.521 kb on - strand, within Pf6N2E2_418 at 487.608 kb on - strand, within Pf6N2E2_418 at 487.754 kb on + strand, within Pf6N2E2_418 at 487.754 kb on + strand, within Pf6N2E2_418 at 488.148 kb on + strand at 488.149 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.170 kb on - strand at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.278 kb on + strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.279 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.400 kb on - strand, within Pf6N2E2_419 at 488.454 kb on - strand at 488.631 kb on - strand, within Pf6N2E2_420 at 488.631 kb on - strand, within Pf6N2E2_420 at 488.836 kb on + strand at 488.837 kb on - strand at 488.864 kb on - strand at 488.864 kb on - strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 487,226 + Pf6N2E2_418 0.56 -0.1 487,226 + Pf6N2E2_418 0.56 -0.6 487,226 + Pf6N2E2_418 0.56 +0.3 487,226 + Pf6N2E2_418 0.56 -1.3 487,226 + Pf6N2E2_418 0.56 -1.7 487,226 + Pf6N2E2_418 0.56 -0.7 487,226 + Pf6N2E2_418 0.56 -2.2 487,226 + Pf6N2E2_418 0.56 +0.3 487,226 + Pf6N2E2_418 0.56 +0.3 487,226 + Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 -0.3 487,227 - Pf6N2E2_418 0.56 -0.7 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 -1.0 487,227 - Pf6N2E2_418 0.56 +0.3 487,227 - Pf6N2E2_418 0.56 -1.3 487,227 - Pf6N2E2_418 0.56 +1.3 487,227 - Pf6N2E2_418 0.56 -0.3 487,227 - Pf6N2E2_418 0.56 -0.7 487,520 + Pf6N2E2_418 0.70 -0.8 487,520 + Pf6N2E2_418 0.70 +0.3 487,521 - Pf6N2E2_418 0.70 +0.3 487,521 - Pf6N2E2_418 0.70 +0.3 487,521 - Pf6N2E2_418 0.70 +0.3 487,608 - Pf6N2E2_418 0.75 +0.3 487,754 + Pf6N2E2_418 0.82 -1.9 487,754 + Pf6N2E2_418 0.82 +0.3 488,148 + -0.5 488,149 - +0.3 488,170 - +0.3 488,170 - +0.3 488,170 - -1.3 488,278 + Pf6N2E2_419 0.34 -2.0 488,278 + Pf6N2E2_419 0.34 -1.3 488,278 + Pf6N2E2_419 0.34 -1.7 488,278 + Pf6N2E2_419 0.34 -0.7 488,279 - Pf6N2E2_419 0.34 +0.3 488,279 - Pf6N2E2_419 0.34 +0.3 488,279 - Pf6N2E2_419 0.34 -0.7 488,279 - Pf6N2E2_419 0.34 -1.7 488,400 - Pf6N2E2_419 0.76 -0.7 488,400 - Pf6N2E2_419 0.76 +0.3 488,454 - +0.3 488,631 - Pf6N2E2_420 0.40 -0.8 488,631 - Pf6N2E2_420 0.40 -0.1 488,836 + +0.3 488,837 - +1.9 488,864 - +0.3 488,864 - +0.3 488,941 + +0.3 488,941 + -0.4 488,941 + +0.3 488,941 + -0.3 488,941 + +0.3 488,942 - +0.3
Or see this region's nucleotide sequence