Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4171

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4170 and Pf6N2E2_4171 are separated by 180 nucleotidesPf6N2E2_4171 and Pf6N2E2_4172 are separated by 21 nucleotidesPf6N2E2_4172 and Pf6N2E2_4173 overlap by 1 nucleotides Pf6N2E2_4170 - Catalase (EC 1.11.1.6), at 4,851,518 to 4,853,656 _4170 Pf6N2E2_4171 - hypothetical protein, at 4,853,837 to 4,854,037 _4171 Pf6N2E2_4172 - Methionine ABC transporter ATP-binding protein, at 4,854,059 to 4,854,928 _4172 Pf6N2E2_4173 - Methionine ABC transporter permease protein, at 4,854,928 to 4,855,602 _4173 Position (kb) 4853 4854 4855Strain fitness (log2 ratio) -2 -1 0 1at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.942 kb on + strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.943 kb on - strand, within Pf6N2E2_4170at 4852.970 kb on + strand, within Pf6N2E2_4170at 4852.970 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.014 kb on + strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.015 kb on - strand, within Pf6N2E2_4170at 4853.185 kb on + strand, within Pf6N2E2_4170at 4853.186 kb on - strand, within Pf6N2E2_4170at 4853.186 kb on - strand, within Pf6N2E2_4170at 4853.310 kb on - strand, within Pf6N2E2_4170at 4853.346 kb on + strand, within Pf6N2E2_4170at 4853.346 kb on + strand, within Pf6N2E2_4170at 4853.346 kb on + strand, within Pf6N2E2_4170at 4853.347 kb on - strand, within Pf6N2E2_4170at 4853.347 kb on - strand, within Pf6N2E2_4170at 4853.347 kb on - strand, within Pf6N2E2_4170at 4853.347 kb on - strand, within Pf6N2E2_4170at 4853.347 kb on - strand, within Pf6N2E2_4170at 4853.358 kb on + strand, within Pf6N2E2_4170at 4853.358 kb on + strand, within Pf6N2E2_4170at 4853.359 kb on - strand, within Pf6N2E2_4170at 4853.359 kb on - strand, within Pf6N2E2_4170at 4853.359 kb on - strand, within Pf6N2E2_4170at 4853.359 kb on - strand, within Pf6N2E2_4170at 4853.650 kb on + strandat 4853.650 kb on + strandat 4853.746 kb on - strandat 4853.784 kb on + strandat 4853.784 kb on + strandat 4853.785 kb on - strandat 4853.832 kb on - strandat 4853.832 kb on - strandat 4853.838 kb on + strandat 4853.839 kb on - strandat 4853.861 kb on + strand, within Pf6N2E2_4171at 4853.861 kb on + strand, within Pf6N2E2_4171at 4853.862 kb on - strand, within Pf6N2E2_4171at 4853.919 kb on - strand, within Pf6N2E2_4171at 4853.919 kb on - strand, within Pf6N2E2_4171at 4853.944 kb on + strand, within Pf6N2E2_4171at 4853.944 kb on + strand, within Pf6N2E2_4171at 4854.332 kb on + strand, within Pf6N2E2_4172at 4854.515 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.744 kb on - strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.788 kb on + strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172at 4854.789 kb on - strand, within Pf6N2E2_4172

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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4,852,942 + Pf6N2E2_4170 0.67 -0.4
4,852,942 + Pf6N2E2_4170 0.67 -1.4
4,852,942 + Pf6N2E2_4170 0.67 -2.3
4,852,942 + Pf6N2E2_4170 0.67 -1.0
4,852,942 + Pf6N2E2_4170 0.67 +0.6
4,852,942 + Pf6N2E2_4170 0.67 +0.6
4,852,943 - Pf6N2E2_4170 0.67 +0.6
4,852,943 - Pf6N2E2_4170 0.67 -0.3
4,852,943 - Pf6N2E2_4170 0.67 -0.3
4,852,943 - Pf6N2E2_4170 0.67 -0.4
4,852,943 - Pf6N2E2_4170 0.67 -0.3
4,852,943 - Pf6N2E2_4170 0.67 -0.6
4,852,943 - Pf6N2E2_4170 0.67 -0.7
4,852,970 + Pf6N2E2_4170 0.68 -0.4
4,852,970 + Pf6N2E2_4170 0.68 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 -0.4
4,853,014 + Pf6N2E2_4170 0.70 +1.6
4,853,014 + Pf6N2E2_4170 0.70 -0.4
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,014 + Pf6N2E2_4170 0.70 +0.8
4,853,014 + Pf6N2E2_4170 0.70 +0.6
4,853,015 - Pf6N2E2_4170 0.70 -1.4
4,853,015 - Pf6N2E2_4170 0.70 -0.4
4,853,015 - Pf6N2E2_4170 0.70 +0.0
4,853,015 - Pf6N2E2_4170 0.70 -0.4
4,853,015 - Pf6N2E2_4170 0.70 +0.6
4,853,015 - Pf6N2E2_4170 0.70 -0.5
4,853,015 - Pf6N2E2_4170 0.70 -1.4
4,853,015 - Pf6N2E2_4170 0.70 -0.0
4,853,185 + Pf6N2E2_4170 0.78 -1.0
4,853,186 - Pf6N2E2_4170 0.78 -0.4
4,853,186 - Pf6N2E2_4170 0.78 -0.5
4,853,310 - Pf6N2E2_4170 0.84 -0.4
4,853,346 + Pf6N2E2_4170 0.85 +0.6
4,853,346 + Pf6N2E2_4170 0.85 -0.4
4,853,346 + Pf6N2E2_4170 0.85 -1.4
4,853,347 - Pf6N2E2_4170 0.86 -0.4
4,853,347 - Pf6N2E2_4170 0.86 +0.6
4,853,347 - Pf6N2E2_4170 0.86 -0.6
4,853,347 - Pf6N2E2_4170 0.86 -0.7
4,853,347 - Pf6N2E2_4170 0.86 -0.4
4,853,358 + Pf6N2E2_4170 0.86 +0.6
4,853,358 + Pf6N2E2_4170 0.86 -1.0
4,853,359 - Pf6N2E2_4170 0.86 +0.6
4,853,359 - Pf6N2E2_4170 0.86 -0.4
4,853,359 - Pf6N2E2_4170 0.86 +0.6
4,853,359 - Pf6N2E2_4170 0.86 -1.3
4,853,650 + +0.6
4,853,650 + +0.2
4,853,746 - -0.4
4,853,784 + -0.4
4,853,784 + +0.6
4,853,785 - +0.6
4,853,832 - +0.6
4,853,832 - +0.6
4,853,838 + -0.4
4,853,839 - +0.1
4,853,861 + Pf6N2E2_4171 0.12 -1.3
4,853,861 + Pf6N2E2_4171 0.12 +0.6
4,853,862 - Pf6N2E2_4171 0.12 -0.4
4,853,919 - Pf6N2E2_4171 0.41 -1.4
4,853,919 - Pf6N2E2_4171 0.41 -0.4
4,853,944 + Pf6N2E2_4171 0.53 +0.6
4,853,944 + Pf6N2E2_4171 0.53 -1.4
4,854,332 + Pf6N2E2_4172 0.31 -0.5
4,854,515 - Pf6N2E2_4172 0.52 -0.4
4,854,744 - Pf6N2E2_4172 0.79 +0.6
4,854,744 - Pf6N2E2_4172 0.79 -1.8
4,854,744 - Pf6N2E2_4172 0.79 -0.4
4,854,788 + Pf6N2E2_4172 0.84 +0.6
4,854,788 + Pf6N2E2_4172 0.84 -1.2
4,854,788 + Pf6N2E2_4172 0.84 -0.6
4,854,789 - Pf6N2E2_4172 0.84 +0.6
4,854,789 - Pf6N2E2_4172 0.84 -0.4
4,854,789 - Pf6N2E2_4172 0.84 +0.6
4,854,789 - Pf6N2E2_4172 0.84 +0.6

Or see this region's nucleotide sequence