Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4152

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
4,830,720	+		Pf6N2E2_4150	0.59	-0.5
4,830,768	+		Pf6N2E2_4150	0.88	+0.5
4,830,768	+		Pf6N2E2_4150	0.88	-0.5
4,830,768	+		Pf6N2E2_4150	0.88	-0.7
4,830,768	+		Pf6N2E2_4150	0.88	-0.5
4,830,769	-		Pf6N2E2_4150	0.89	+0.5
4,830,810	-				-1.6
4,830,813	+				+0.5
4,830,813	+				-1.0
4,830,814	-				-0.5
4,830,814	-				+0.5
4,830,814	-				-0.0
4,830,814	-				-0.4
4,830,814	-				-0.6
4,830,814	-				-0.7
4,830,814	-				-1.0
4,830,869	-				+1.5
4,831,236	-				+0.7
4,831,403	+				+0.5
4,831,403	+				+0.5
4,831,403	+				+0.5
4,831,403	+				-0.5
4,831,403	+				+0.5
4,831,404	-				-1.2
4,831,404	-				-1.0
4,831,479	-				-0.5
4,831,505	+				+0.5
4,831,505	+				-1.0
4,831,541	+				+0.5
4,831,542	-				-0.5
4,831,542	-				-2.3
4,831,542	-				-0.5
4,831,544	+				+0.5
4,831,608	-				-0.5
4,831,618	-				-0.5
4,831,690	+				+0.5
4,831,690	+				-0.5
4,831,690	+				+0.5
4,831,690	+				-0.5
4,831,691	-				-0.5
4,831,691	-				+0.5
4,831,691	-				+0.5
4,831,691	-				-0.5
4,831,721	+				+0.5
4,831,721	+				-1.0
4,831,721	+				+0.5
4,831,721	+				-0.3
4,831,721	+				+0.5
4,831,722	-				+0.5
4,831,722	-				+0.5
4,831,723	+				-2.1
4,831,940	+		Pf6N2E2_4152	0.23	+0.5
4,831,941	-		Pf6N2E2_4152	0.23	-0.5
4,831,941	-		Pf6N2E2_4152	0.23	-0.5
4,831,941	-		Pf6N2E2_4152	0.23	+0.5
4,832,001	+		Pf6N2E2_4152	0.28	-0.5
4,832,001	+		Pf6N2E2_4152	0.28	-0.5
4,832,002	-		Pf6N2E2_4152	0.28	-1.5
4,832,314	+		Pf6N2E2_4152	0.51	-0.5
4,832,315	-		Pf6N2E2_4152	0.51	-1.5
4,832,426	+		Pf6N2E2_4152	0.59	+0.5
4,832,427	-		Pf6N2E2_4152	0.60	+0.5
4,832,466	+		Pf6N2E2_4152	0.62	-2.0
4,832,643	-		Pf6N2E2_4152	0.76	-0.5
4,832,643	-		Pf6N2E2_4152	0.76	-1.9
4,832,691	+		Pf6N2E2_4152	0.79	-0.5
4,832,691	+		Pf6N2E2_4152	0.79	+0.5
4,832,691	+		Pf6N2E2_4152	0.79	-0.5
4,832,691	+		Pf6N2E2_4152	0.79	+0.5
4,832,692	-		Pf6N2E2_4152	0.79	-1.0
4,832,692	-		Pf6N2E2_4152	0.79	-0.5
4,832,692	-		Pf6N2E2_4152	0.79	-0.5
4,832,960	+				-1.0
4,832,960	+				-0.5
4,832,960	+				+0.5
4,832,961	-				+0.5
4,832,961	-				-0.5
4,832,961	-				-0.5
4,832,961	-				+0.5
4,832,961	-				+0.5
4,832,961	-				+0.5
4,832,961	-				+0.5
4,832,961	-				-1.6
4,832,981	+				+0.5
4,832,981	+				-0.6
4,832,981	+				-1.0
4,832,981	+				-0.5
4,832,982	-				+0.4
4,832,982	-				-0.6
4,833,023	+				+0.1
4,833,024	-				-0.0
4,833,235	-		Pf6N2E2_4153	0.14	+0.4
4,833,318	+		Pf6N2E2_4153	0.19	+1.1
4,833,592	+				+3.1
4,833,592	+		Pf6N2E2_4153	0.34	+0.8