Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2900

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,389,266	+		Pf6N2E2_2899	0.33	+0.4
3,389,267	-		Pf6N2E2_2899	0.34	+0.4
3,389,267	-		Pf6N2E2_2899	0.34	+0.8
3,389,333	+		Pf6N2E2_2899	0.40	-0.6
3,389,477	+		Pf6N2E2_2899	0.54	-0.0
3,389,478	-		Pf6N2E2_2899	0.55	+0.4
3,389,478	-		Pf6N2E2_2899	0.55	+0.4
3,389,478	-		Pf6N2E2_2899	0.55	+0.4
3,389,478	-		Pf6N2E2_2899	0.55	-0.1
3,389,507	+		Pf6N2E2_2899	0.57	+0.4
3,389,508	-		Pf6N2E2_2899	0.58	-1.6
3,389,864	+				-0.9
3,389,864	+				-0.7
3,389,864	+				-0.4
3,389,864	+				+0.2
3,389,865	-				+0.4
3,389,902	+				-1.9
3,389,930	+				-1.6
3,389,930	+				+0.4
3,389,931	-				-0.6
3,389,931	-				+0.4
3,389,963	+				+0.4
3,389,963	+				-0.6
3,389,964	-				-1.3
3,389,964	-				-1.2
3,390,294	+		Pf6N2E2_2900	0.22	-1.2
3,390,295	-		Pf6N2E2_2900	0.22	-1.2
3,390,431	-		Pf6N2E2_2900	0.48	+0.4
3,390,588	+		Pf6N2E2_2900	0.78	+1.0
3,390,589	-		Pf6N2E2_2900	0.78	+2.0
3,390,589	-		Pf6N2E2_2900	0.78	-0.5
3,390,683	+				-1.2
3,390,724	+				+0.4
3,390,724	+				+0.1
3,390,725	-				+0.4
3,390,725	-				+0.4
3,390,725	-				-0.6
3,390,725	-				+0.4
3,390,734	-				+0.4
3,390,755	+				-1.2
3,390,755	+				+0.4
3,390,756	-				+0.4
3,390,756	-				+0.4
3,390,764	+				-0.2
3,390,765	-				+0.4
3,390,765	-				-0.4
3,390,783	+				+0.4
3,390,784	-				+1.0
3,390,787	-				-0.6
3,391,269	+		Pf6N2E2_2901	0.45	-0.6
3,391,270	-		Pf6N2E2_2901	0.45	-0.9
3,391,270	-		Pf6N2E2_2901	0.45	-1.2
3,391,585	+		Pf6N2E2_2901	0.80	-0.7
3,391,585	+		Pf6N2E2_2901	0.80	+0.4
3,391,605	+		Pf6N2E2_2901	0.82	-1.3
3,391,606	-		Pf6N2E2_2901	0.83	+0.4