Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2474

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,919,861	+				-0.6
2,919,861	+				+0.4
2,919,867	-				-2.5
2,919,895	+				+0.4
2,919,895	+				+0.4
2,919,895	+				-0.5
2,919,895	+				-0.4
2,919,896	-				-2.8
2,919,896	-				+0.4
2,919,896	-				-2.2
2,919,896	-				-1.8
2,919,896	-				-2.0
2,919,896	-				-1.9
2,919,896	-				+0.4
2,919,896	-				-1.8
2,919,896	-				-2.2
2,919,965	+				+1.4
2,919,965	+				-0.6
2,919,965	+				+0.4
2,919,965	+				-0.6
2,919,966	-				-1.2
2,919,966	-				-2.4
2,919,966	-				-0.6
2,919,968	+				-1.2
2,919,968	+				+0.4
2,919,968	+				-1.1
2,919,968	+				+0.4
2,919,969	-				+0.4
2,920,059	+		Pf6N2E2_2472	0.25	-0.7
2,920,060	-		Pf6N2E2_2472	0.25	-3.1
2,920,077	+		Pf6N2E2_2472	0.40	+0.4
2,920,078	-		Pf6N2E2_2472	0.41	+0.4
2,920,121	-		Pf6N2E2_2472	0.79	-0.6
2,920,124	+		Pf6N2E2_2472	0.82	-1.2
2,920,125	-		Pf6N2E2_2472	0.82	+0.4
2,920,139	+				-1.2
2,920,139	+				-1.0
2,920,140	-				+0.4
2,920,224	+				-0.6
2,920,224	+				+0.4
2,920,225	-				-1.9
2,920,373	-				-0.6
2,920,376	+				-1.9
2,920,376	+				-1.4
2,920,377	-				-0.6
2,920,379	+				-2.4
2,920,379	+				-0.6
2,920,379	+				-3.2
2,920,380	-				+0.4
2,920,380	-				+0.4
2,920,385	+				+0.4
2,920,385	+				-1.2
2,920,392	+				+0.4
2,920,395	+				-2.8
2,920,395	+				-0.6
2,920,395	+				-2.3
2,920,395	+				-0.6
2,920,395	+				-3.1
2,920,395	+				-3.6
2,920,395	+				-1.2
2,920,399	+				-2.7
2,920,439	+				-1.6
2,920,439	+				-3.3
2,920,439	+				+0.4
2,920,439	+				-1.6
2,920,439	+				-2.9
2,920,439	+				-1.6
2,920,440	-				+0.4
2,920,440	-				+0.4
2,920,608	+		Pf6N2E2_2473	0.57	-1.9
2,920,713	+				-0.1
2,920,713	+				+0.4
2,920,713	+				+0.4
2,920,713	+				-4.0
2,920,713	+				-4.0
2,920,714	-				-3.1
2,920,716	+				-3.4
2,920,717	-				-1.2
2,920,806	+				-0.6
2,920,806	+				-2.4
2,920,807	-				+0.4
2,920,807	-				-2.4
2,920,857	+				-2.0
2,920,857	+				-2.9
2,920,858	-				-1.6
2,920,904	-				-1.2
2,921,088	+		Pf6N2E2_2474	0.24	-4.2
2,921,088	+		Pf6N2E2_2474	0.24	-0.6
2,921,089	-		Pf6N2E2_2474	0.24	-0.6
2,921,089	-		Pf6N2E2_2474	0.24	+0.4
2,921,118	+		Pf6N2E2_2474	0.27	-0.6
2,921,118	+		Pf6N2E2_2474	0.27	+0.4
2,921,119	-		Pf6N2E2_2474	0.27	-2.4
2,921,119	-		Pf6N2E2_2474	0.27	-3.1
2,921,119	-		Pf6N2E2_2474	0.27	-1.2
2,921,182	+		Pf6N2E2_2474	0.34	-0.6
2,921,183	-		Pf6N2E2_2474	0.34	+0.4
2,921,183	-		Pf6N2E2_2474	0.34	-3.7
2,921,469	+		Pf6N2E2_2474	0.63	-2.9
2,921,469	+		Pf6N2E2_2474	0.63	-0.6
2,921,470	-		Pf6N2E2_2474	0.63	-0.6
2,921,470	-		Pf6N2E2_2474	0.63	-1.2
2,921,497	-		Pf6N2E2_2474	0.66	+0.4
2,921,497	-		Pf6N2E2_2474	0.66	+0.4
2,921,497	-		Pf6N2E2_2474	0.66	-2.9
2,921,499	+		Pf6N2E2_2474	0.66	-0.6
2,921,500	-		Pf6N2E2_2474	0.66	-1.2
2,921,640	+		Pf6N2E2_2474	0.81	-1.2
2,921,652	+		Pf6N2E2_2474	0.82	-1.2
2,921,652	+		Pf6N2E2_2474	0.82	-2.1
2,921,653	-		Pf6N2E2_2474	0.82	-3.7
2,921,653	-		Pf6N2E2_2474	0.82	-3.0
2,921,653	-		Pf6N2E2_2474	0.82	-0.6
2,921,653	-		Pf6N2E2_2474	0.82	-3.5
2,921,653	-		Pf6N2E2_2474	0.82	-2.6
2,921,653	-		Pf6N2E2_2474	0.82	-2.9
2,921,685	+		Pf6N2E2_2474	0.85	+0.4
2,921,685	+		Pf6N2E2_2474	0.85	-2.7
2,921,685	+		Pf6N2E2_2474	0.85	+0.4
2,921,773	+				-1.2
2,921,877	+				-1.0
2,921,877	+				+0.4
2,921,878	-				-0.6
2,921,878	-				-2.2
2,921,878	-				-0.6
2,921,878	-				+0.4
2,921,878	-				+0.4
2,921,892	+				+0.4
2,921,893	-				-0.7
2,921,996	-				-1.4
2,921,996	-				-1.0
2,921,996	-				-0.2
2,922,372	-				+0.4
2,922,372	-				-0.7
2,922,372	-				-1.6
2,922,507	+		Pf6N2E2_2476	0.27	-0.6
2,922,508	-		Pf6N2E2_2476	0.27	-0.6
2,922,532	-		Pf6N2E2_2476	0.31	-0.6
2,922,543	+		Pf6N2E2_2476	0.33	+0.4
2,922,775	+		Pf6N2E2_2476	0.71	+0.4