Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2474

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2472 and Pf6N2E2_2473 are separated by 319 nucleotidesPf6N2E2_2473 and Pf6N2E2_2474 are separated by 140 nucleotidesPf6N2E2_2474 and Pf6N2E2_2475 are separated by 166 nucleotidesPf6N2E2_2475 and Pf6N2E2_2476 are separated by 56 nucleotides Pf6N2E2_2472 - hypothetical protein, at 2,920,031 to 2,920,144 _2472 Pf6N2E2_2473 - Major outer membrane lipoprotein I, at 2,920,464 to 2,920,715 _2473 Pf6N2E2_2474 - ErfK/YbiS/YcfS/YnhG family protein, at 2,920,856 to 2,921,827 _2474 Pf6N2E2_2475 - FIG00953861: hypothetical protein, at 2,921,994 to 2,922,287 _2475 Pf6N2E2_2476 - Arylesterase precursor (EC 3.1.1.2), at 2,922,344 to 2,922,949 _2476 Position (kb) 2920 2921 2922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2919.861 kb on + strandat 2919.861 kb on + strandat 2919.867 kb on - strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.966 kb on - strandat 2919.966 kb on - strandat 2919.966 kb on - strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.969 kb on - strandat 2920.059 kb on + strand, within Pf6N2E2_2472at 2920.060 kb on - strand, within Pf6N2E2_2472at 2920.077 kb on + strand, within Pf6N2E2_2472at 2920.078 kb on - strand, within Pf6N2E2_2472at 2920.121 kb on - strand, within Pf6N2E2_2472at 2920.124 kb on + strand, within Pf6N2E2_2472at 2920.125 kb on - strand, within Pf6N2E2_2472at 2920.139 kb on + strandat 2920.139 kb on + strandat 2920.140 kb on - strandat 2920.224 kb on + strandat 2920.224 kb on + strandat 2920.225 kb on - strandat 2920.373 kb on - strandat 2920.376 kb on + strandat 2920.376 kb on + strandat 2920.377 kb on - strandat 2920.379 kb on + strandat 2920.379 kb on + strandat 2920.379 kb on + strandat 2920.380 kb on - strandat 2920.380 kb on - strandat 2920.385 kb on + strandat 2920.385 kb on + strandat 2920.392 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.395 kb on + strandat 2920.399 kb on + strandat 2920.439 kb on + strandat 2920.439 kb on + strandat 2920.439 kb on + strandat 2920.439 kb on + strandat 2920.439 kb on + strandat 2920.439 kb on + strandat 2920.440 kb on - strandat 2920.440 kb on - strandat 2920.608 kb on + strand, within Pf6N2E2_2473at 2920.713 kb on + strandat 2920.713 kb on + strandat 2920.713 kb on + strandat 2920.713 kb on + strandat 2920.713 kb on + strandat 2920.714 kb on - strandat 2920.716 kb on + strandat 2920.717 kb on - strandat 2920.806 kb on + strandat 2920.806 kb on + strandat 2920.807 kb on - strandat 2920.807 kb on - strandat 2920.857 kb on + strandat 2920.857 kb on + strandat 2920.858 kb on - strandat 2920.904 kb on - strandat 2921.088 kb on + strand, within Pf6N2E2_2474at 2921.088 kb on + strand, within Pf6N2E2_2474at 2921.089 kb on - strand, within Pf6N2E2_2474at 2921.089 kb on - strand, within Pf6N2E2_2474at 2921.118 kb on + strand, within Pf6N2E2_2474at 2921.118 kb on + strand, within Pf6N2E2_2474at 2921.119 kb on - strand, within Pf6N2E2_2474at 2921.119 kb on - strand, within Pf6N2E2_2474at 2921.119 kb on - strand, within Pf6N2E2_2474at 2921.182 kb on + strand, within Pf6N2E2_2474at 2921.183 kb on - strand, within Pf6N2E2_2474at 2921.183 kb on - strand, within Pf6N2E2_2474at 2921.469 kb on + strand, within Pf6N2E2_2474at 2921.469 kb on + strand, within Pf6N2E2_2474at 2921.470 kb on - strand, within Pf6N2E2_2474at 2921.470 kb on - strand, within Pf6N2E2_2474at 2921.497 kb on - strand, within Pf6N2E2_2474at 2921.497 kb on - strand, within Pf6N2E2_2474at 2921.497 kb on - strand, within Pf6N2E2_2474at 2921.499 kb on + strand, within Pf6N2E2_2474at 2921.500 kb on - strand, within Pf6N2E2_2474at 2921.640 kb on + strand, within Pf6N2E2_2474at 2921.652 kb on + strand, within Pf6N2E2_2474at 2921.652 kb on + strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.653 kb on - strand, within Pf6N2E2_2474at 2921.685 kb on + strand, within Pf6N2E2_2474at 2921.685 kb on + strand, within Pf6N2E2_2474at 2921.685 kb on + strand, within Pf6N2E2_2474at 2921.773 kb on + strandat 2921.877 kb on + strandat 2921.877 kb on + strandat 2921.878 kb on - strandat 2921.878 kb on - strandat 2921.878 kb on - strandat 2921.878 kb on - strandat 2921.878 kb on - strandat 2921.892 kb on + strandat 2921.893 kb on - strandat 2921.996 kb on - strandat 2921.996 kb on - strandat 2921.996 kb on - strandat 2922.372 kb on - strandat 2922.372 kb on - strandat 2922.372 kb on - strandat 2922.507 kb on + strand, within Pf6N2E2_2476at 2922.508 kb on - strand, within Pf6N2E2_2476at 2922.532 kb on - strand, within Pf6N2E2_2476at 2922.543 kb on + strand, within Pf6N2E2_2476at 2922.775 kb on + strand, within Pf6N2E2_2476

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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2,919,861 + -0.6
2,919,861 + +0.4
2,919,867 - -2.5
2,919,895 + +0.4
2,919,895 + +0.4
2,919,895 + -0.5
2,919,895 + -0.4
2,919,896 - -2.8
2,919,896 - +0.4
2,919,896 - -2.2
2,919,896 - -1.8
2,919,896 - -2.0
2,919,896 - -1.9
2,919,896 - +0.4
2,919,896 - -1.8
2,919,896 - -2.2
2,919,965 + +1.4
2,919,965 + -0.6
2,919,965 + +0.4
2,919,965 + -0.6
2,919,966 - -1.2
2,919,966 - -2.4
2,919,966 - -0.6
2,919,968 + -1.2
2,919,968 + +0.4
2,919,968 + -1.1
2,919,968 + +0.4
2,919,969 - +0.4
2,920,059 + Pf6N2E2_2472 0.25 -0.7
2,920,060 - Pf6N2E2_2472 0.25 -3.1
2,920,077 + Pf6N2E2_2472 0.40 +0.4
2,920,078 - Pf6N2E2_2472 0.41 +0.4
2,920,121 - Pf6N2E2_2472 0.79 -0.6
2,920,124 + Pf6N2E2_2472 0.82 -1.2
2,920,125 - Pf6N2E2_2472 0.82 +0.4
2,920,139 + -1.2
2,920,139 + -1.0
2,920,140 - +0.4
2,920,224 + -0.6
2,920,224 + +0.4
2,920,225 - -1.9
2,920,373 - -0.6
2,920,376 + -1.9
2,920,376 + -1.4
2,920,377 - -0.6
2,920,379 + -2.4
2,920,379 + -0.6
2,920,379 + -3.2
2,920,380 - +0.4
2,920,380 - +0.4
2,920,385 + +0.4
2,920,385 + -1.2
2,920,392 + +0.4
2,920,395 + -2.8
2,920,395 + -0.6
2,920,395 + -2.3
2,920,395 + -0.6
2,920,395 + -3.1
2,920,395 + -3.6
2,920,395 + -1.2
2,920,399 + -2.7
2,920,439 + -1.6
2,920,439 + -3.3
2,920,439 + +0.4
2,920,439 + -1.6
2,920,439 + -2.9
2,920,439 + -1.6
2,920,440 - +0.4
2,920,440 - +0.4
2,920,608 + Pf6N2E2_2473 0.57 -1.9
2,920,713 + -0.1
2,920,713 + +0.4
2,920,713 + +0.4
2,920,713 + -4.0
2,920,713 + -4.0
2,920,714 - -3.1
2,920,716 + -3.4
2,920,717 - -1.2
2,920,806 + -0.6
2,920,806 + -2.4
2,920,807 - +0.4
2,920,807 - -2.4
2,920,857 + -2.0
2,920,857 + -2.9
2,920,858 - -1.6
2,920,904 - -1.2
2,921,088 + Pf6N2E2_2474 0.24 -4.2
2,921,088 + Pf6N2E2_2474 0.24 -0.6
2,921,089 - Pf6N2E2_2474 0.24 -0.6
2,921,089 - Pf6N2E2_2474 0.24 +0.4
2,921,118 + Pf6N2E2_2474 0.27 -0.6
2,921,118 + Pf6N2E2_2474 0.27 +0.4
2,921,119 - Pf6N2E2_2474 0.27 -2.4
2,921,119 - Pf6N2E2_2474 0.27 -3.1
2,921,119 - Pf6N2E2_2474 0.27 -1.2
2,921,182 + Pf6N2E2_2474 0.34 -0.6
2,921,183 - Pf6N2E2_2474 0.34 +0.4
2,921,183 - Pf6N2E2_2474 0.34 -3.7
2,921,469 + Pf6N2E2_2474 0.63 -2.9
2,921,469 + Pf6N2E2_2474 0.63 -0.6
2,921,470 - Pf6N2E2_2474 0.63 -0.6
2,921,470 - Pf6N2E2_2474 0.63 -1.2
2,921,497 - Pf6N2E2_2474 0.66 +0.4
2,921,497 - Pf6N2E2_2474 0.66 +0.4
2,921,497 - Pf6N2E2_2474 0.66 -2.9
2,921,499 + Pf6N2E2_2474 0.66 -0.6
2,921,500 - Pf6N2E2_2474 0.66 -1.2
2,921,640 + Pf6N2E2_2474 0.81 -1.2
2,921,652 + Pf6N2E2_2474 0.82 -1.2
2,921,652 + Pf6N2E2_2474 0.82 -2.1
2,921,653 - Pf6N2E2_2474 0.82 -3.7
2,921,653 - Pf6N2E2_2474 0.82 -3.0
2,921,653 - Pf6N2E2_2474 0.82 -0.6
2,921,653 - Pf6N2E2_2474 0.82 -3.5
2,921,653 - Pf6N2E2_2474 0.82 -2.6
2,921,653 - Pf6N2E2_2474 0.82 -2.9
2,921,685 + Pf6N2E2_2474 0.85 +0.4
2,921,685 + Pf6N2E2_2474 0.85 -2.7
2,921,685 + Pf6N2E2_2474 0.85 +0.4
2,921,773 + -1.2
2,921,877 + -1.0
2,921,877 + +0.4
2,921,878 - -0.6
2,921,878 - -2.2
2,921,878 - -0.6
2,921,878 - +0.4
2,921,878 - +0.4
2,921,892 + +0.4
2,921,893 - -0.7
2,921,996 - -1.4
2,921,996 - -1.0
2,921,996 - -0.2
2,922,372 - +0.4
2,922,372 - -0.7
2,922,372 - -1.6
2,922,507 + Pf6N2E2_2476 0.27 -0.6
2,922,508 - Pf6N2E2_2476 0.27 -0.6
2,922,532 - Pf6N2E2_2476 0.31 -0.6
2,922,543 + Pf6N2E2_2476 0.33 +0.4
2,922,775 + Pf6N2E2_2476 0.71 +0.4

Or see this region's nucleotide sequence