Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2139

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,544,930	+				+0.3
2,544,930	+				-0.3
2,544,974	+				+0.3
2,544,975	-				-0.3
2,544,975	-				-1.3
2,545,218	-				+0.3
2,545,218	-				-0.7
2,545,227	+				-0.4
2,545,228	-				+0.3
2,545,228	-				+0.3
2,545,290	+				-0.7
2,545,291	-				+0.3
2,545,341	+		Pf6N2E2_2138	0.18	-1.0
2,545,341	+		Pf6N2E2_2138	0.18	-0.3
2,545,341	+		Pf6N2E2_2138	0.18	-0.6
2,545,342	-		Pf6N2E2_2138	0.18	-0.3
2,545,342	-		Pf6N2E2_2138	0.18	-0.5
2,545,436	+		Pf6N2E2_2138	0.39	+0.3
2,545,437	-		Pf6N2E2_2138	0.40	-1.7
2,545,685	+				+0.3
2,545,685	+				-0.8
2,545,685	+				-0.7
2,545,686	-				+1.1
2,545,686	-				-0.7
2,545,686	-				+0.3
2,545,686	-				+0.3
2,545,739	+				-1.3
2,545,739	+				+0.3
2,545,739	+				-0.7
2,545,739	+				-1.3
2,545,739	+				+1.3
2,545,739	+				-1.7
2,545,740	-				+0.3
2,545,740	-				-2.0
2,545,740	-				+0.3
2,545,740	-				-0.4
2,545,740	-				-1.7
2,545,740	-				+0.3
2,545,740	-				+0.3
2,545,740	-				-0.7
2,545,740	-				+0.3
2,545,740	-				-0.7
2,545,740	-				+0.3
2,545,740	-				-0.4
2,545,742	-				+0.0
2,545,818	+				-0.7
2,545,819	-				+0.3
2,545,820	+				+0.3
2,545,821	-				-0.7
2,545,889	+		Pf6N2E2_2139	0.20	+0.3
2,545,965	-		Pf6N2E2_2139	0.32	-2.6
2,546,138	+		Pf6N2E2_2139	0.61	-0.7
2,546,139	-		Pf6N2E2_2139	0.61	+0.3
2,546,533	+		Pf6N2E2_2140	0.25	-0.7
2,546,533	+		Pf6N2E2_2140	0.25	+0.3
2,546,533	+		Pf6N2E2_2140	0.25	-1.1
2,546,534	-		Pf6N2E2_2140	0.26	-0.7
2,546,534	-		Pf6N2E2_2140	0.26	-0.7
2,546,557	+		Pf6N2E2_2140	0.29	+0.3
2,546,557	+		Pf6N2E2_2140	0.29	+0.3
2,546,558	-		Pf6N2E2_2140	0.29	+0.3
2,546,680	-		Pf6N2E2_2140	0.48	-0.4
2,547,351	+		Pf6N2E2_2141	0.21	-0.7