Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_766

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_764 and Pf6N2E2_765 are separated by 91 nucleotidesPf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotidesPf6N2E2_766 and Pf6N2E2_767 are separated by 236 nucleotides Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747 _764 Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585 _765 Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324 _766 Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541 _767 Position (kb) 877 878 879Strain fitness (log2 ratio) -2 -1 0 1at 876.663 kb on - strandat 876.754 kb on + strandat 876.755 kb on - strandat 876.755 kb on - strandat 876.788 kb on + strandat 876.788 kb on + strandat 876.788 kb on + strandat 876.789 kb on - strandat 876.797 kb on + strandat 876.797 kb on + strandat 876.797 kb on + strandat 876.798 kb on - strandat 876.798 kb on - strandat 876.798 kb on - strandat 876.798 kb on - strandat 876.798 kb on - strandat 876.798 kb on - strandat 876.808 kb on + strandat 876.808 kb on + strandat 876.835 kb on + strandat 876.835 kb on + strandat 876.835 kb on + strandat 876.835 kb on + strandat 876.836 kb on - strandat 876.836 kb on - strandat 876.836 kb on - strandat 876.959 kb on - strand, within Pf6N2E2_765at 877.197 kb on + strand, within Pf6N2E2_765at 877.197 kb on + strand, within Pf6N2E2_765at 877.197 kb on + strand, within Pf6N2E2_765at 877.198 kb on - strand, within Pf6N2E2_765at 877.335 kb on + strand, within Pf6N2E2_765at 877.335 kb on + strand, within Pf6N2E2_765at 877.336 kb on - strand, within Pf6N2E2_765at 877.417 kb on + strand, within Pf6N2E2_765at 877.417 kb on + strand, within Pf6N2E2_765at 877.418 kb on - strand, within Pf6N2E2_765at 877.618 kb on + strandat 877.618 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.663 kb on - strandat 877.771 kb on + strand, within Pf6N2E2_766at 877.834 kb on + strand, within Pf6N2E2_766at 877.867 kb on + strand, within Pf6N2E2_766at 877.894 kb on - strand, within Pf6N2E2_766at 877.920 kb on + strand, within Pf6N2E2_766at 878.014 kb on + strand, within Pf6N2E2_766at 878.014 kb on + strand, within Pf6N2E2_766at 878.119 kb on + strand, within Pf6N2E2_766at 878.331 kb on + strandat 878.338 kb on - strandat 878.562 kb on + strandat 878.562 kb on + strandat 878.562 kb on + strandat 878.563 kb on - strandat 878.563 kb on - strandat 878.563 kb on - strandat 878.860 kb on + strand, within Pf6N2E2_767at 878.892 kb on + strand, within Pf6N2E2_767at 878.892 kb on + strand, within Pf6N2E2_767at 878.892 kb on + strand, within Pf6N2E2_767at 878.892 kb on + strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.893 kb on - strand, within Pf6N2E2_767at 878.919 kb on + strand, within Pf6N2E2_767at 879.135 kb on + strand, within Pf6N2E2_767at 879.135 kb on + strand, within Pf6N2E2_767at 879.135 kb on + strand, within Pf6N2E2_767at 879.135 kb on + strand, within Pf6N2E2_767at 879.136 kb on - strand, within Pf6N2E2_767at 879.136 kb on - strand, within Pf6N2E2_767at 879.136 kb on - strand, within Pf6N2E2_767at 879.145 kb on + strand, within Pf6N2E2_767at 879.191 kb on - strand, within Pf6N2E2_767at 879.191 kb on - strand, within Pf6N2E2_767at 879.268 kb on + strand, within Pf6N2E2_767

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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876,663 - +0.2
876,754 + +0.2
876,755 - +0.2
876,755 - +0.2
876,788 + +0.2
876,788 + +0.2
876,788 + +0.2
876,789 - +0.2
876,797 + +1.2
876,797 + -0.8
876,797 + +0.2
876,798 - +0.2
876,798 - +0.2
876,798 - -0.5
876,798 - +0.2
876,798 - -1.3
876,798 - -1.3
876,808 + -0.8
876,808 + -0.7
876,835 + +0.2
876,835 + -0.8
876,835 + -0.8
876,835 + -0.7
876,836 - -0.4
876,836 - -1.8
876,836 - -0.9
876,959 - Pf6N2E2_765 0.16 -0.9
877,197 + Pf6N2E2_765 0.48 +0.2
877,197 + Pf6N2E2_765 0.48 +0.2
877,197 + Pf6N2E2_765 0.48 -0.8
877,198 - Pf6N2E2_765 0.48 +0.2
877,335 + Pf6N2E2_765 0.66 +0.2
877,335 + Pf6N2E2_765 0.66 +0.2
877,336 - Pf6N2E2_765 0.67 -0.4
877,417 + Pf6N2E2_765 0.77 +0.2
877,417 + Pf6N2E2_765 0.77 -0.8
877,418 - Pf6N2E2_765 0.78 +0.2
877,618 + -1.0
877,618 + +0.2
877,622 + +0.2
877,622 + +0.2
877,622 + +0.2
877,623 - +0.2
877,623 - +0.2
877,623 - +0.2
877,623 - -0.9
877,623 - +0.2
877,623 - +0.2
877,663 - -0.8
877,771 + Pf6N2E2_766 0.19 -0.8
877,834 + Pf6N2E2_766 0.28 +0.2
877,867 + Pf6N2E2_766 0.33 +0.2
877,894 - Pf6N2E2_766 0.37 -0.8
877,920 + Pf6N2E2_766 0.41 +0.2
878,014 + Pf6N2E2_766 0.54 +0.2
878,014 + Pf6N2E2_766 0.54 +0.5
878,119 + Pf6N2E2_766 0.70 +0.2
878,331 + -1.3
878,338 - -0.8
878,562 + -0.8
878,562 + +0.2
878,562 + -0.2
878,563 - -0.8
878,563 - +0.2
878,563 - +0.2
878,860 + Pf6N2E2_767 0.30 +0.2
878,892 + Pf6N2E2_767 0.34 +0.2
878,892 + Pf6N2E2_767 0.34 -0.8
878,892 + Pf6N2E2_767 0.34 +0.2
878,892 + Pf6N2E2_767 0.34 +0.2
878,893 - Pf6N2E2_767 0.34 -0.8
878,893 - Pf6N2E2_767 0.34 +0.2
878,893 - Pf6N2E2_767 0.34 +0.2
878,893 - Pf6N2E2_767 0.34 +0.2
878,893 - Pf6N2E2_767 0.34 +0.2
878,893 - Pf6N2E2_767 0.34 -0.3
878,893 - Pf6N2E2_767 0.34 -0.1
878,919 + Pf6N2E2_767 0.36 -0.8
879,135 + Pf6N2E2_767 0.59 -1.8
879,135 + Pf6N2E2_767 0.59 +0.2
879,135 + Pf6N2E2_767 0.59 -0.2
879,135 + Pf6N2E2_767 0.59 +0.2
879,136 - Pf6N2E2_767 0.59 -0.9
879,136 - Pf6N2E2_767 0.59 -0.3
879,136 - Pf6N2E2_767 0.59 +0.2
879,145 + Pf6N2E2_767 0.60 +0.0
879,191 - Pf6N2E2_767 0.64 -0.8
879,191 - Pf6N2E2_767 0.64 +0.2
879,268 + Pf6N2E2_767 0.72 +0.2

Or see this region's nucleotide sequence